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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947821
Clone id YMU02A01NGRM0001_D06
Library
Length 432
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRM0001_D06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AAATATGAGCACATGCCGAAGTGTGCTGGACCTGAATGTTCTGTGGCAGAACATACAAAG
CATCAAAAGTCGATGATGAAGAGCCAGCGCAATGCCATTCTTGTCATTGCTGCTCTACTG
CTCTATTGGCTCCTCTATTGCGTTACCCACATTCTGGTACAGATAGATAGGATGAATCAG
CAACTTAAGCAGTTGAAGCAGCGCCATGCAGATTGACATGTCTATCGATTCCGGCACAGC
AAGCCTGGTTCTTGAGAGTTGGCTATGAGTCTTAACATCTAAATTAGGCTGCTTTTCTTG
GATGCATTTGCGCATCAGGTGTCCAATCTATAAGAGACAAAATCCCTTACTTTTTGAGCT
GTTGTTGTTGTGGCTGTCAAATGTGTGTGAGACATTTTTAGGTGAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id B1KJV0
Definition sp|B1KJV0|NUOCD_SHEWM NADH-quinone oxidoreductase subunit C/D OS=Shewanella woodyi (strain ATCC 51908 / MS32)
Align length 87
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947821|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_D06, 5'
         (404 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|B1KJV0|NUOCD_SHEWM NADH-quinone oxidoreductase subunit C/D OS...    30   3.7  
sp|Q9QYC6|GPR37_RAT Probable G-protein coupled receptor 37 OS=Ra...    29   8.2  
sp|Q9QY42|GPR37_MOUSE Probable G-protein coupled receptor 37 OS=...    29   8.2  
sp|O15354|GPR37_HUMAN Probable G-protein coupled receptor 37 OS=...    29   8.2  

>sp|B1KJV0|NUOCD_SHEWM NADH-quinone oxidoreductase subunit C/D
           OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=nuoC
           PE=3 SV=1
          Length = 598

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
 Frame = -2

Query: 220 HVNLHGAASTA*VADSSYL--SVPECG*RNRGANRAVEQQ*QEWH----------CAGSS 77
           H ++HG    A   D  ++  SVP+ G  +RGA +  E+  Q WH            G  
Sbjct: 224 HPSVHGVFRIALQLDGEHIINSVPDIGYHHRGAEKIAER--QTWHGFIPYTDRIDYLGGV 281

Query: 76  SSTFDALYVLPQ--NIQVQHTSACAHI 2
            + F  +  + Q  NIQV     C  +
Sbjct: 282 MNNFPYILAIEQLANIQVSERVKCIRV 308


>sp|Q9QYC6|GPR37_RAT Probable G-protein coupled receptor 37
           OS=Rattus norvegicus GN=Gpr37 PE=2 SV=1
          Length = 603

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 351 FLSCCCCGCQMCVR 392
           F+ CCCC C+ C++
Sbjct: 550 FMECCCCCCEECIQ 563


>sp|Q9QY42|GPR37_MOUSE Probable G-protein coupled receptor 37 OS=Mus
           musculus GN=Gpr37 PE=2 SV=1
          Length = 600

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 351 FLSCCCCGCQMCVR 392
           F+ CCCC C+ C++
Sbjct: 547 FMECCCCCCEECIQ 560


>sp|O15354|GPR37_HUMAN Probable G-protein coupled receptor 37
           OS=Homo sapiens GN=GPR37 PE=1 SV=2
          Length = 613

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 351 FLSCCCCGCQMCVR 392
           F+ CCCC C+ C++
Sbjct: 560 FMECCCCCCEECIQ 573
tr_hit_id A9NU24
Definition tr|A9NU24|A9NU24_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 67
Score (bit) 66.6
E-value 6.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947821|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_D06, 5'
         (404 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NU24|A9NU24_PICSI Putative uncharacterized protein OS=Picea...    67   6e-10
tr|A9PC35|A9PC35_POPTR Putative uncharacterized protein OS=Popul...    65   2e-09
tr|Q9M9N5|Q9M9N5_ARATH T17B22.15 protein (Putative uncharacteriz...    64   5e-09
tr|A9PCI7|A9PCI7_POPTR Putative uncharacterized protein OS=Popul...    64   5e-09
tr|B7FMB6|B7FMB6_MEDTR Putative uncharacterized protein OS=Medic...    62   1e-08
tr|B7FHH4|B7FHH4_MEDTR Putative uncharacterized protein OS=Medic...    62   1e-08
tr|Q8L8M1|Q8L8M1_ARATH Putative uncharacterized protein OS=Arabi...    61   2e-08
tr|Q9FFJ0|Q9FFJ0_ARATH Gb|AAF26109.1 (Putative uncharacterized p...    61   3e-08
tr|A7P3T9|A7P3T9_VITVI Chromosome chr1 scaffold_5, whole genome ...    61   3e-08
tr|A9RAV0|A9RAV0_PHYPA Predicted protein OS=Physcomitrella paten...    55   2e-06
tr|A7PHB3|A7PHB3_VITVI Chromosome chr17 scaffold_16, whole genom...    54   4e-06
tr|B6ST10|B6ST10_MAIZE Erwinia induced protein 2 OS=Zea mays PE=...    53   7e-06
tr|A9S3H1|A9S3H1_PHYPA Predicted protein OS=Physcomitrella paten...    53   7e-06
tr|A2X9C1|A2X9C1_ORYSI Putative uncharacterized protein OS=Oryza...    52   2e-05
tr|Q84XG6|Q84XG6_SOLTU Erwinia induced protein 2 OS=Solanum tube...    51   3e-05
tr|Q6Z756|Q6Z756_ORYSJ Os02g0734900 protein OS=Oryza sativa subs...    51   3e-05
tr|B6TVB9|B6TVB9_MAIZE Erwinia induced protein 2 OS=Zea mays PE=...    51   3e-05
tr|B6T975|B6T975_MAIZE Erwinia induced protein 2 OS=Zea mays PE=...    51   3e-05
tr|A3AB42|A3AB42_ORYSJ Putative uncharacterized protein OS=Oryza...    51   3e-05
tr|B6SIK5|B6SIK5_MAIZE Erwinia induced protein 2 OS=Zea mays PE=...    50   4e-05
tr|Q6J9F6|Q6J9F6_9LILI Putative uncharacterized protein OS=Xerop...    44   0.003
tr|A9P9M2|A9P9M2_POPTR Putative uncharacterized protein OS=Popul...    35   1.5  
tr|Q9LSH0|Q9LSH0_ARATH Gb|AAF26109.1 (Putative uncharacterized p...    33   5.5  

>tr|A9NU24|A9NU24_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 130

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 30/67 (44%), Positives = 44/67 (65%)
 Frame = +1

Query: 1   KYEHMPKCAGPECSVAEHTKHQKSMMKSQRNXXXXXXXXXXXXXXXCVTHILVQIDRMNQ 180
           KYE  P C G  CS +EH +HQKS+MKSQRN               CVT+++++I+RMN+
Sbjct: 62  KYETTPSCEGHMCSPSEHLRHQKSVMKSQRNFMLITSALLLYWLLFCVTNMVMRIERMNE 121

Query: 181 QLKQLKQ 201
           Q+++LK+
Sbjct: 122 QIEKLKR 128


>tr|A9PC35|A9PC35_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 130

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 29/68 (42%), Positives = 42/68 (61%)
 Frame = +1

Query: 1   KYEHMPKCAGPECSVAEHTKHQKSMMKSQRNXXXXXXXXXXXXXXXCVTHILVQIDRMNQ 180
           KYE  P C G  CS  EH +HQKS+MKSQRN                VTH++V+I+++NQ
Sbjct: 62  KYETRPSCEGESCSPTEHLRHQKSIMKSQRNALLIGAALIFYWLLYSVTHLVVKIEQLNQ 121

Query: 181 QLKQLKQR 204
           ++++LK +
Sbjct: 122 RVERLKSK 129


>tr|Q9M9N5|Q9M9N5_ARATH T17B22.15 protein (Putative uncharacterized
           protein At3g03160) (Putative uncharacterized protein)
           OS=Arabidopsis thaliana GN=At3g03160 PE=2 SV=1
          Length = 130

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 28/68 (41%), Positives = 43/68 (63%)
 Frame = +1

Query: 1   KYEHMPKCAGPECSVAEHTKHQKSMMKSQRNXXXXXXXXXXXXXXXCVTHILVQIDRMNQ 180
           KYE MP C G  C+ +EH +HQKSMMKSQRN                VT+++V+I+ +NQ
Sbjct: 62  KYETMPSCDGDSCTPSEHLRHQKSMMKSQRNALLIAAALVFYWILYSVTNLVVKIEHLNQ 121

Query: 181 QLKQLKQR 204
           ++++L+ +
Sbjct: 122 RIERLRNK 129


>tr|A9PCI7|A9PCI7_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 130

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 28/68 (41%), Positives = 42/68 (61%)
 Frame = +1

Query: 1   KYEHMPKCAGPECSVAEHTKHQKSMMKSQRNXXXXXXXXXXXXXXXCVTHILVQIDRMNQ 180
           KYE  P C G  C+  EH +HQKS+MKSQRN                VTH++V+I+++NQ
Sbjct: 62  KYETRPSCEGESCTPTEHLRHQKSIMKSQRNALLIGVALVFYWLLYSVTHLVVKIEQLNQ 121

Query: 181 QLKQLKQR 204
           ++++LK +
Sbjct: 122 RVERLKNK 129


>tr|B7FMB6|B7FMB6_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 130

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 42/67 (62%)
 Frame = +1

Query: 1   KYEHMPKCAGPECSVAEHTKHQKSMMKSQRNXXXXXXXXXXXXXXXCVTHILVQIDRMNQ 180
           KYE  P C G  C+ +EH +HQKS+MKSQRN                VT+++V+ID +NQ
Sbjct: 62  KYETRPSCEGDSCTPSEHLRHQKSIMKSQRNALLIAAALPFYWLLYSVTNLVVRIDLLNQ 121

Query: 181 QLKQLKQ 201
           +L++LK+
Sbjct: 122 RLERLKR 128


>tr|B7FHH4|B7FHH4_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 130

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 42/67 (62%)
 Frame = +1

Query: 1   KYEHMPKCAGPECSVAEHTKHQKSMMKSQRNXXXXXXXXXXXXXXXCVTHILVQIDRMNQ 180
           KYE  P C G  C+ +EH +HQKS+MKSQRN                VT+++V+ID +NQ
Sbjct: 62  KYETRPSCEGDSCTPSEHLRHQKSIMKSQRNALLIAAALLFYWLLYSVTNLVVRIDLLNQ 121

Query: 181 QLKQLKQ 201
           +L++LK+
Sbjct: 122 RLERLKR 128


>tr|Q8L8M1|Q8L8M1_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 130

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 27/69 (39%), Positives = 44/69 (63%)
 Frame = +1

Query: 1   KYEHMPKCAGPECSVAEHTKHQKSMMKSQRNXXXXXXXXXXXXXXXCVTHILVQIDRMNQ 180
           KYE  P C G  C+ +EH +HQKS+MKSQRN                VT+++V+I+++NQ
Sbjct: 62  KYETRPSCDGDSCTPSEHLRHQKSIMKSQRNALLIASALVFYWILYSVTNLVVRIEQLNQ 121

Query: 181 QLKQLKQRH 207
           ++++LK ++
Sbjct: 122 RVERLKNKN 130


>tr|Q9FFJ0|Q9FFJ0_ARATH Gb|AAF26109.1 (Putative uncharacterized
           protein At5g17190) OS=Arabidopsis thaliana GN=At5g17190
           PE=2 SV=1
          Length = 130

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 27/68 (39%), Positives = 43/68 (63%)
 Frame = +1

Query: 1   KYEHMPKCAGPECSVAEHTKHQKSMMKSQRNXXXXXXXXXXXXXXXCVTHILVQIDRMNQ 180
           KYE  P C G  C+ +EH +HQKS+MKSQRN                VT+++V+I+++NQ
Sbjct: 62  KYETRPSCDGDSCTPSEHLRHQKSIMKSQRNALLIASALVFYWILYSVTNLVVRIEQLNQ 121

Query: 181 QLKQLKQR 204
           ++++LK +
Sbjct: 122 RVERLKNK 129


>tr|A7P3T9|A7P3T9_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030575001
           PE=4 SV=1
          Length = 130

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 28/68 (41%), Positives = 41/68 (60%)
 Frame = +1

Query: 1   KYEHMPKCAGPECSVAEHTKHQKSMMKSQRNXXXXXXXXXXXXXXXCVTHILVQIDRMNQ 180
           KYE  P C    C+  EH +HQKS+MKSQRN                VT+++V+I+++NQ
Sbjct: 62  KYETRPSCESESCTPTEHLRHQKSIMKSQRNVLLIAAALIFYWLLYSVTNLVVRIEQLNQ 121

Query: 181 QLKQLKQR 204
           +L++LK R
Sbjct: 122 RLERLKNR 129


>tr|A9RAV0|A9RAV0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_158428 PE=4 SV=1
          Length = 130

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 25/66 (37%), Positives = 38/66 (57%)
 Frame = +1

Query: 1   KYEHMPKCAGPECSVAEHTKHQKSMMKSQRNXXXXXXXXXXXXXXXCVTHILVQIDRMNQ 180
           K+EHMP+C GP C   E  +  KS+MKSQRN                VT ++V++++++ 
Sbjct: 62  KFEHMPECTGPRCGPMERDRASKSLMKSQRNAILVAGALLLYWTLYRVTAMMVKMEQLST 121

Query: 181 QLKQLK 198
           QLK +K
Sbjct: 122 QLKNIK 127