DK947841 |
Clone id |
YMU02A01NGRM0001_F04 |
Library |
YMU02 |
Length |
676 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRM0001_F04. 5' end sequence. |
Accession |
DK947841 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL559Contig1 |
Sequence |
GGGAACCTTCGTTCTAGCGCACCTGATCGCCTACGAGCTGTGCGAGGAGTGCGCTTGATT GCAGCGATGAAGGTAGTCGCGGCTTACCTGCTGGCGCTGCTGGGGGGCAACTGCTCGCCT TCCGCTGCCGACATCAAGAATATTCTTGGCTCAGTTGGTTCTGAAGCTGACGATGACAGG ATAGACTTGCTACTGAGCGAGTTGAAAGGCAAGGACATTGTGGAGCTCATTGCTGCCGGA AAGGAGAAGCTTGCTTCTGTCCCTGCAGGTGGAGGTGGTGGCGTTGTGGTCAGTGCAGGA GGTGGTGGTGGTGCAGGTCCTGCCGCAGCAGTTGAGGAGAAAAGGGAGGAGAAAGAGGAA AAGAAGGAGCCCGAGGAGGAGTCCGATGATGACATGGGATTCAGTCTGTTTGACTAAGGT TTTTGCAAAGGGAGGCAGTGAACCGATTTTGTAATGCCCTTTCTTTAGATGTAATAGAAG TATATTTTCAGATGGCCAGTCTGAATTGGATTGTGCCCGCATTTTTGACTTGAATATTGA GTCCTTAAATGTGCAGCTGCTGAATTCCAAGCGTTTTCCACGTCACATGGCTGGCTTTTA TGTAGCTTGTTCTGGGTCTATTGCATAAGTTTTTTGGGGATTTGCAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P41099 |
Definition |
sp|P41099|RLA2_PARAR 60S acidic ribosomal protein P2 OS=Parthenium argentatum |
Align length |
50 |
Score (bit) |
72.8 |
E-value |
1.0e-12 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q3HVP0 |
Definition |
tr|Q3HVP0|Q3HVP0_SOLTU 60s acidic ribosomal protein-like protein OS=Solanum tuberosum |
Align length |
104 |
Score (bit) |
84.3 |
E-value |
6.0e-15 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947841|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRM0001_F04, 5' (645 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q3HVP0|Q3HVP0_SOLTU 60s acidic ribosomal protein-like protein... 84 6e-15 tr|A7PPG7|A7PPG7_VITVI Chromosome chr8 scaffold_23, whole genome... 83 2e-14 tr|A5AGQ2|A5AGQ2_VITVI Putative uncharacterized protein (Chromos... 82 3e-14 tr|A9PCM7|A9PCM7_POPTR Putative uncharacterized protein OS=Popul... 81 6e-14 tr|Q8H2B9|Q8H2B9_PRUDU 60s acidic ribosomal protein OS=Prunus du... 80 8e-14 tr|A8QJ72|A8QJ72_9ROSI 60S acidic ribosomal protein P2 OS=Juglan... 80 1e-13 tr|A9PAR7|A9PAR7_POPTR Putative uncharacterized protein OS=Popul... 79 2e-13 tr|A9P894|A9P894_POPTR Putative uncharacterized protein OS=Popul... 79 2e-13 tr|A7QBE6|A7QBE6_VITVI Chromosome chr13 scaffold_74, whole genom... 77 7e-13 tr|Q7XYD5|Q7XYD5_WHEAT Acidic ribosomal protein (Fragment) OS=Tr... 76 2e-12 tr|Q65WT5|Q65WT5_ORYSJ Os05g0445500 protein OS=Oryza sativa subs... 75 3e-12 tr|Q5YJR8|Q5YJR8_HYAOR 60S acidic ribosomal protein OS=Hyacinthu... 75 3e-12 tr|B8AYR2|B8AYR2_ORYSI Putative uncharacterized protein OS=Oryza... 75 3e-12 tr|A3B4J3|A3B4J3_ORYSJ Putative uncharacterized protein OS=Oryza... 75 3e-12 tr|Q677G0|Q677G0_HYAOR Acidic ribosomal protein OS=Hyacinthus or... 74 6e-12 tr|A9U0Z9|A9U0Z9_PHYPA Predicted protein OS=Physcomitrella paten... 74 6e-12 tr|A9RPY2|A9RPY2_PHYPA Predicted protein OS=Physcomitrella paten... 74 8e-12 tr|A9RKJ0|A9RKJ0_PHYPA Predicted protein OS=Physcomitrella paten... 74 8e-12 tr|Q38M67|Q38M67_SOLTU Putative uncharacterized protein OS=Solan... 74 1e-11 tr|A9NPB9|A9NPB9_PICSI Putative uncharacterized protein OS=Picea... 74 1e-11 tr|A5BNT4|A5BNT4_VITVI Putative uncharacterized protein OS=Vitis... 74 1e-11 tr|B7FMX7|B7FMX7_MEDTR Putative uncharacterized protein OS=Medic... 73 1e-11 tr|B2WCX9|B2WCX9_PYRTR 60S acidic ribosomal protein P2 OS=Pyreno... 73 1e-11 tr|B6DRE4|B6DRE4_9LAMI 60S acidic ribosomal protein P2-like prot... 73 2e-11 tr|A9S6G5|A9S6G5_PHYPA Predicted protein OS=Physcomitrella paten... 73 2e-11 tr|A9NWC8|A9NWC8_PICSI Putative uncharacterized protein OS=Picea... 73 2e-11 tr|A7QN01|A7QN01_VITVI Chromosome undetermined scaffold_129, who... 72 2e-11 tr|A9RV72|A9RV72_PHYPA Predicted protein OS=Physcomitrella paten... 72 4e-11 tr|Q2H653|Q2H653_CHAGB Putative uncharacterized protein OS=Chaet... 71 5e-11 tr|B8P0N4|B8P0N4_9APHY 60S acidic ribosomal protein P2 OS=Postia... 71 5e-11
>tr|Q3HVP0|Q3HVP0_SOLTU 60s acidic ribosomal protein-like protein OS=Solanum tuberosum PE=4 SV=1 Length = 115
Score = 84.3 bits (207), Expect = 6e-15 Identities = 51/104 (49%), Positives = 57/104 (54%) Frame = +1
Query: 103 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKLXXXXXXXXXX 282 GGN SPSAAD+K IL SVG+EADDDRI+LLLS++KGKDI ELIAAG+EKL Sbjct: 13 GGNTSPSAADLKKILASVGAEADDDRIELLLSQVKGKDITELIAAGREKL-ASVPAGGGG 71
Query: 283 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 414 SDDDMGFSLFD Sbjct: 72 GVAVAVSGGGGGGAAAPAAEEKKVEKKVEEKEESDDDMGFSLFD 115
>tr|A7PPG7|A7PPG7_VITVI Chromosome chr8 scaffold_23, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00021645001 PE=4 SV=1 Length = 114
Score = 82.8 bits (203), Expect = 2e-14 Identities = 50/104 (48%), Positives = 57/104 (54%) Frame = +1
Query: 103 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKLXXXXXXXXXX 282 GGN PSA D+K+ILGSVG+EADDDRI+LLLSE+KGKDI ELIA+G+EKL Sbjct: 13 GGNTCPSANDLKDILGSVGAEADDDRIELLLSEVKGKDITELIASGREKL--ASVPSGGG 70
Query: 283 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 414 SDDDMGFSLFD Sbjct: 71 VAVAATAVGGASGGGAPAAPEPKKEEKVEEKEESDDDMGFSLFD 114
>tr|A5AGQ2|A5AGQ2_VITVI Putative uncharacterized protein (Chromosome chr6 scaffold_25, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00022049001 PE=4 SV=1 Length = 113
Score = 82.0 bits (201), Expect = 3e-14 Identities = 49/104 (47%), Positives = 57/104 (54%) Frame = +1
Query: 103 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKLXXXXXXXXXX 282 GGN PSA D+K+ILGSVG+EADDDRI+LLL+E+KGKDI ELIA+G+EKL Sbjct: 13 GGNTCPSAEDLKDILGSVGAEADDDRIELLLAEVKGKDITELIASGREKL---ASVPSGG 69
Query: 283 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 414 SDDDMGFSLFD Sbjct: 70 GAAVAVAAPGGGGAAAPAAAEPKKEEKVEEKEESDDDMGFSLFD 113
>tr|A9PCM7|A9PCM7_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 113
Score = 80.9 bits (198), Expect = 6e-14 Identities = 48/104 (46%), Positives = 56/104 (53%) Frame = +1
Query: 103 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKLXXXXXXXXXX 282 GGN P+A D+KNILGSVG++ADDDRI+LLLS +KGKDI ELIA+G+EKL Sbjct: 13 GGNTCPTAEDLKNILGSVGADADDDRIELLLSSVKGKDITELIASGREKL---ASVPSGG 69
Query: 283 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 414 SDDDMGFSLFD Sbjct: 70 GVAVSAGAAPAAAGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 113
>tr|Q8H2B9|Q8H2B9_PRUDU 60s acidic ribosomal protein OS=Prunus dulcis GN=AL60SRP PE=4 SV=1 Length = 113
Score = 80.5 bits (197), Expect = 8e-14 Identities = 48/104 (46%), Positives = 56/104 (53%) Frame = +1
Query: 103 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKLXXXXXXXXXX 282 GGN +PSA D+K+ILGSVG+E DDDRI LLLSE+KGKDI ELIA+G+EKL Sbjct: 13 GGNTTPSAEDLKDILGSVGAETDDDRIQLLLSEVKGKDITELIASGREKL---ASVPSGG 69
Query: 283 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 414 +DDDMGFSLFD Sbjct: 70 GAVAVAAPGAGAGAAAPAAAEPKKEEKVEEKEDTDDDMGFSLFD 113
>tr|A8QJ72|A8QJ72_9ROSI 60S acidic ribosomal protein P2 OS=Juglans regia PE=4 SV=1 Length = 113
Score = 80.1 bits (196), Expect = 1e-13 Identities = 48/104 (46%), Positives = 56/104 (53%) Frame = +1
Query: 103 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKLXXXXXXXXXX 282 GGN +P D+K+ILGSVG+EADDD+I+LLLSE+KGKDI ELIAAG+EKL Sbjct: 13 GGNTTPCTDDLKHILGSVGAEADDDKIELLLSEVKGKDITELIAAGREKL---ASVPSGG 69
Query: 283 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 414 SDDDMGFSLFD Sbjct: 70 GGIAVAAAAGGAPAAAAAAAEPKKEEKVEEKKESDDDMGFSLFD 113
>tr|A9PAR7|A9PAR7_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 114
Score = 79.0 bits (193), Expect = 2e-13 Identities = 47/104 (45%), Positives = 56/104 (53%) Frame = +1
Query: 103 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKLXXXXXXXXXX 282 GGN P+A D+K+ILGSVG++ADDDRI+LLLS +KGKDI ELIA+G+EKL Sbjct: 13 GGNTCPTAEDLKHILGSVGADADDDRIELLLSSVKGKDITELIASGREKL--ASVPSGGG 70
Query: 283 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 414 SDDDMGFSLFD Sbjct: 71 VAVASGGAPAAASGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 114
>tr|A9P894|A9P894_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 114
Score = 79.0 bits (193), Expect = 2e-13 Identities = 47/104 (45%), Positives = 56/104 (53%) Frame = +1
Query: 103 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKLXXXXXXXXXX 282 GGN P+A D+K+ILGSVG++ADDDRI+LLLS +KGKDI ELIA+G+EKL Sbjct: 13 GGNTCPTAEDLKHILGSVGADADDDRIELLLSSVKGKDITELIASGREKL--ASVPSGGG 70
Query: 283 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 414 SDDDMGFSLFD Sbjct: 71 VAVAAGGAPAAASGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 114
>tr|A7QBE6|A7QBE6_VITVI Chromosome chr13 scaffold_74, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034930001 PE=4 SV=1 Length = 111
Score = 77.4 bits (189), Expect = 7e-13 Identities = 38/50 (76%), Positives = 45/50 (90%) Frame = +1
Query: 103 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKL 252 GGN SP A D+K+ILGSVG+EADDD I+LLLSE+KGKDI ELIA+G+EKL Sbjct: 13 GGNGSPCADDLKSILGSVGAEADDDGIELLLSEVKGKDITELIASGREKL 62
>tr|Q7XYD5|Q7XYD5_WHEAT Acidic ribosomal protein (Fragment) OS=Triticum aestivum PE=2 SV=1 Length = 138
Score = 75.9 bits (185), Expect = 2e-12 Identities = 44/104 (42%), Positives = 56/104 (53%) Frame = +1
Query: 103 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKLXXXXXXXXXX 282 GGN SPSAAD+KNIL SVG+EAD+++++ LL+ELKGKDI E+IA+G+EK Sbjct: 38 GGNSSPSAADVKNILDSVGAEADEEKLEFLLAELKGKDITEVIASGREKF---AAVPSGG 94
Query: 283 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 414 SD+DMGFSLFD Sbjct: 95 GAIAVGAPAAASGGGAAPAAESKKEEKVEEKEESDEDMGFSLFD 138
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