DK947842 |
Clone id |
YMU02A01NGRM0001_F05 |
Library |
YMU02 |
Length |
585 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRM0001_F05. 5' end sequence. |
Accession |
DK947842 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL317Contig1 |
Sequence |
AATCTTAATAAGCTCAGCCCCATTTTGATGCGACTGGTAGCTAGGGGATAAGGCTGCACT GTGGGTAGCCATGGCAGTGGCAACGCTTCCTTTTTCGCGCCTCTCCCTTCTCCACTCCTC GACCTCCTCCTCCGCCTCCATCTCTCCTCCCAAATCTGGAAATCTGCGTCTCGCCTCCTC GCACAGTTTCGCCATTACTCCACTAGCTCACGTGGCCTTTAGGGGATTCTCCATCTCCAA CGTCAGACGGCGTTCATCTATTATAGTTGCCGCAGCTGCTCCAACCCAGAAAACGAAGGC TGATTCTGCTGTCAAGAGAGCTCGTCAAGCAGAGAAACGGCGCGTGCGTAACAAGGCTCG TAAATCAGAGATTCGCACTCGCATGAAGAAGGTTTTTGTTGCGATAGAGGGCCTGAAGAA GGATGCAAGTGCTTCTGAAGAGATGCTGTCCCCCATTGAAACTCTTATTGGTGAGGCTTT CTCGACTATTGACAAAGCAGTGAAAATTGGAACACTTCATAGGAATACTGGAGCCCGCAG GAAGTCTAGATTGTCACGCGCAAAAAAGGTTTTGGAAGTGGAGCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9ASV6 |
Definition |
sp|Q9ASV6|RR20_ARATH 30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana |
Align length |
79 |
Score (bit) |
105.0 |
E-value |
2.0e-22 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7P1S0 |
Definition |
tr|A7P1S0|A7P1S0_VITVI Chromosome chr19 scaffold_4, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
79 |
Score (bit) |
112.0 |
E-value |
2.0e-23 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947842|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRM0001_F05, 5' (585 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7P1S0|A7P1S0_VITVI Chromosome chr19 scaffold_4, whole genome... 112 2e-23 tr|A9NTN6|A9NTN6_PICSI Putative uncharacterized protein OS=Picea... 108 2e-22 tr|A9NV81|A9NV81_PICSI Putative uncharacterized protein OS=Picea... 108 3e-22 tr|A9TU81|A9TU81_PHYPA Predicted protein (Fragment) OS=Physcomit... 105 2e-21 tr|A9SME7|A9SME7_PHYPA Predicted protein (Fragment) OS=Physcomit... 91 6e-17 tr|Q0JKF5|Q0JKF5_ORYSJ cDNA clone:001-110-B01, full insert seque... 88 4e-16 tr|A2WTS1|A2WTS1_ORYSI Putative uncharacterized protein OS=Oryza... 88 4e-16 tr|B6UG52|B6UG52_MAIZE Ribosomal protein rpS20 OS=Zea mays PE=2 ... 87 7e-16 tr|B4FR87|B4FR87_MAIZE Putative uncharacterized protein OS=Zea m... 87 7e-16 tr|A4RT68|A4RT68_OSTLU Predicted protein (Fragment) OS=Ostreococ... 73 1e-11 tr|Q01E25|Q01E25_OSTTA Homology to unknown gene OS=Ostreococcus ... 71 5e-11 tr|A8JDN4|A8JDN4_CHLRE Plastid ribosomal protein S20 OS=Chlamydo... 70 9e-11 tr|Q110G9|Q110G9_TRIEI SSU ribosomal protein S20P OS=Trichodesmi... 69 3e-10 tr|A3Z9C5|A3Z9C5_9SYNE Ribosomal protein S20 OS=Synechococcus sp... 69 3e-10 tr|B7KG02|B7KG02_9CHRO Ribosomal protein S20 OS=Cyanothece sp. P... 68 3e-10 tr|B4B2V9|B4B2V9_9CHRO Ribosomal protein S20 OS=Cyanothece sp. P... 66 1e-09 tr|Q063W2|Q063W2_9SYNE 30S ribosomal protein S20 OS=Synechococcu... 66 2e-09 tr|Q4C3X9|Q4C3X9_CROWT Ribosomal protein S20p OS=Crocosphaera wa... 65 3e-09 tr|B5VU91|B5VU91_SPIMA Ribosomal protein S20 OS=Arthrospira maxi... 65 3e-09 tr|A0ZH94|A0ZH94_NODSP 30S ribosomal protein S20 OS=Nodularia sp... 64 6e-09 tr|A4CR12|A4CR12_SYNPV 30S ribosomal protein S20 OS=Synechococcu... 64 8e-09 tr|A8YIQ3|A8YIQ3_MICAE RpsT protein OS=Microcystis aeruginosa PC... 63 1e-08 tr|B1WZT9|B1WZT9_CYAA5 30S ribosomal protein S20 OS=Cyanothece (... 63 1e-08 tr|B8HTW2|B8HTW2_9CHRO Ribosomal protein S20 OS=Cyanothece sp. P... 63 1e-08 tr|Q7XYL1|Q7XYL1_BIGNA Ribosomal protein rpS20 OS=Bigelowiella n... 63 1e-08 tr|B7JWV1|B7JWV1_SYNP8 Ribosomal protein S20 OS=Synechococcus sp... 62 2e-08 tr|B4C2P5|B4C2P5_9CHRO Ribosomal protein S20 OS=Cyanothece sp. P... 62 2e-08 tr|B1X3N1|B1X3N1_PAUCH 30S ribosomal protein S20 OS=Paulinella c... 62 2e-08 tr|Q05WE5|Q05WE5_9SYNE 30S ribosomal protein S20 OS=Synechococcu... 61 5e-08 tr|B5ILX7|B5ILX7_9CHRO Ribosomal protein S20 OS=Cyanobium sp. PC... 60 1e-07
>tr|A7P1S0|A7P1S0_VITVI Chromosome chr19 scaffold_4, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00027731001 PE=4 SV=1 Length = 183
Score = 112 bits (279), Expect = 2e-23 Identities = 57/79 (72%), Positives = 63/79 (79%) Frame = +2
Query: 296 KADSAVKRARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIETLIGE 475 KADSA KR RQAEKRR+ NKARKSEIRTRMKKV ++GLKK A E + PIE LI E Sbjct: 76 KADSAAKRVRQAEKRRIYNKARKSEIRTRMKKVLEELDGLKKKPDAQAEEVLPIEKLIAE 135
Query: 476 AFSTIDKAVKIGTLHRNTG 532 A+S IDKAVK+GTLHRNTG Sbjct: 136 AYSVIDKAVKVGTLHRNTG 154
>tr|A9NTN6|A9NTN6_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 178
Score = 108 bits (270), Expect = 2e-22 Identities = 58/95 (61%), Positives = 68/95 (71%) Frame = +2
Query: 296 KADSAVKRARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIETLIGE 475 K DSA KRARQAEKRR+ NK+ KSEI+TRM+KVF A+ LKK S S E L PIE LI E Sbjct: 73 KPDSAAKRARQAEKRRIYNKSHKSEIKTRMRKVFEALGKLKKATSPSPEDLIPIEKLIAE 132
Query: 476 AFSTIDKAVKIGTLHRNTGXXXXXXXXXXXXVLEV 580 A+S+IDKAVK+GTLHRNTG V+E+ Sbjct: 133 AYSSIDKAVKVGTLHRNTGGHRKSRLSRRKKVVEI 167
>tr|A9NV81|A9NV81_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 178
Score = 108 bits (269), Expect = 3e-22 Identities = 56/79 (70%), Positives = 64/79 (81%) Frame = +2
Query: 296 KADSAVKRARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIETLIGE 475 K DSA KRARQAEKRR+ NK+ KSEI+TRM+KVF A+ LKK S S E L PIE LI E Sbjct: 73 KPDSAAKRARQAEKRRIYNKSHKSEIKTRMRKVFEALGKLKKATSPSPEDLIPIEKLIAE 132
Query: 476 AFSTIDKAVKIGTLHRNTG 532 A+S+IDKAVK+GTLHRNTG Sbjct: 133 AYSSIDKAVKVGTLHRNTG 151
>tr|A9TU81|A9TU81_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_8053 PE=4 SV=1 Length = 125
Score = 105 bits (261), Expect = 2e-21 Identities = 53/77 (68%), Positives = 61/77 (79%) Frame = +2
Query: 296 KADSAVKRARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIETLIGE 475 K D A KRARQ EKRRV +KA+KSE+ TRMKKVFVA++GLKK A+EE PIE LIGE Sbjct: 14 KPDQADKRARQNEKRRVYHKAKKSEVSTRMKKVFVALDGLKKKTDATEEDFKPIEKLIGE 73
Query: 476 AFSTIDKAVKIGTLHRN 526 AF IDKA K+G+LHRN Sbjct: 74 AFKIIDKAAKVGSLHRN 90
>tr|A9SME7|A9SME7_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_18492 PE=4 SV=1 Length = 123
Score = 90.5 bits (223), Expect = 6e-17 Identities = 46/77 (59%), Positives = 57/77 (74%) Frame = +2
Query: 296 KADSAVKRARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIETLIGE 475 K D A KRARQ+EKRRV +K++KSEI TRMKKVFVA++ LKK ASEE +E LI E Sbjct: 14 KPDQAAKRARQSEKRRVYHKSKKSEISTRMKKVFVALDVLKKKTDASEEDFKHVEKLISE 73
Query: 476 AFSTIDKAVKIGTLHRN 526 AF IDKA ++ ++H N Sbjct: 74 AFKIIDKAAQVSSIHVN 90
>tr|Q0JKF5|Q0JKF5_ORYSJ cDNA clone:001-110-B01, full insert sequence OS=Oryza sativa subsp. japonica GN=Os01g0678600 PE=2 SV=1 Length = 196
Score = 87.8 bits (216), Expect = 4e-16 Identities = 43/79 (54%), Positives = 56/79 (70%) Frame = +2
Query: 296 KADSAVKRARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIETLIGE 475 + DS KR RQ ++ R+RN ARK+E+RTRMKKV A+E L+K A A+ E + IE I E Sbjct: 87 RPDSVKKRERQNDRHRIRNHARKAEMRTRMKKVLKALEKLRKKADATPEDIIQIEKWISE 146
Query: 476 AFSTIDKAVKIGTLHRNTG 532 A+ IDK VK+G +HRNTG Sbjct: 147 AYKAIDKTVKVGAMHRNTG 165
>tr|A2WTS1|A2WTS1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_03263 PE=4 SV=1 Length = 196
Score = 87.8 bits (216), Expect = 4e-16 Identities = 43/79 (54%), Positives = 56/79 (70%) Frame = +2
Query: 296 KADSAVKRARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIETLIGE 475 + DS KR RQ ++ R+RN ARK+E+RTRMKKV A+E L+K A A+ E + IE I E Sbjct: 87 RPDSVKKRERQNDRHRIRNHARKAEMRTRMKKVLKALEKLRKKADATPEDIIQIEKWISE 146
Query: 476 AFSTIDKAVKIGTLHRNTG 532 A+ IDK VK+G +HRNTG Sbjct: 147 AYKAIDKTVKVGAMHRNTG 165
>tr|B6UG52|B6UG52_MAIZE Ribosomal protein rpS20 OS=Zea mays PE=2 SV=1 Length = 194
Score = 87.0 bits (214), Expect = 7e-16 Identities = 44/82 (53%), Positives = 55/82 (67%) Frame = +2
Query: 284 TQKTKADSAVKRARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIET 463 T + DS KR RQ +K R+RN ARK+E+RTRMKKV A+E L+K A E + IE Sbjct: 81 TTGRRPDSVKKRERQNDKHRIRNHARKAEMRTRMKKVLRALEKLRKKPDAQPEEIIEIEK 140
Query: 464 LIGEAFSTIDKAVKIGTLHRNT 529 LI EA+ IDK VK+G +HRNT Sbjct: 141 LIAEAYKAIDKTVKVGAMHRNT 162
>tr|B4FR87|B4FR87_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 194
Score = 87.0 bits (214), Expect = 7e-16 Identities = 44/82 (53%), Positives = 55/82 (67%) Frame = +2
Query: 284 TQKTKADSAVKRARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIET 463 T + DS KR RQ +K R+RN ARK+E+RTRMKKV A+E L+K A E + IE Sbjct: 81 TTGRRPDSVKKRERQNDKHRIRNHARKAEMRTRMKKVLRALEKLRKKPDAQPEEIIEIEK 140
Query: 464 LIGEAFSTIDKAVKIGTLHRNT 529 LI EA+ IDK VK+G +HRNT Sbjct: 141 LIAEAYKAIDKTVKVGAMHRNT 162
>tr|A4RT68|A4RT68_OSTLU Predicted protein (Fragment) OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_9610 PE=4 SV=1 Length = 84
Score = 73.2 bits (178), Expect = 1e-11 Identities = 39/72 (54%), Positives = 49/72 (68%) Frame = +2
Query: 317 RARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIETLIGEAFSTIDK 496 R R ++K R+ NKARKSEI TRMKKVFV L + +E +S +ETLI EA ++DK Sbjct: 1 RTRLSQKERLYNKARKSEITTRMKKVFVNASELMAADACTEADISGLETLISEATKSVDK 60
Query: 497 AVKIGTLHRNTG 532 AV G LH+NTG Sbjct: 61 AVARGILHKNTG 72
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