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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947848
Clone id YMU02A01NGRM0001_F12
Library
Length 161
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRM0001_F12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CTCGTAGTTGGATCTCGGGGCGGGGCGAGCGGTCCGCCTCTTTTGGTGTGCACTGGCCGC
TCCGCCCTTTCTGTCGGGGACGCGCTCCTGGCCTTAATTGGCTGGGACGCGGATTCGGCG
ATGTTACTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P07645
Definition sp|P07645|VGLD_SUHVR Protein gp50 OS=Suid herpesvirus 1 (strain Rice)
Align length 35
Score (bit) 33.1
E-value 0.44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947848|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_F12, 5'
         (131 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P07645|VGLD_SUHVR Protein gp50 OS=Suid herpesvirus 1 (strain ...    33   0.44 
sp|Q3AHW1|IF2_SYNSC Translation initiation factor IF-2 OS=Synech...    33   0.44 
sp|P36338|UL47_BHV1C Tegument protein UL47 OS=Bovine herpesvirus...    30   2.9  
sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4 OS=Sch...    30   4.9  
sp|Q9NPZ5|B3GA2_HUMAN Galactosylgalactosylxylosylprotein 3-beta-...    30   4.9  
sp|P26550|VE4_HPV5B Probable protein E4 OS=Human papillomavirus ...    29   8.3  
sp|Q9H252|KCNH6_HUMAN Potassium voltage-gated channel subfamily ...    29   8.3  
sp|Q5KAI2|DBP7_CRYNE ATP-dependent RNA helicase DBP7 OS=Cryptoco...    29   8.3  

>sp|P07645|VGLD_SUHVR Protein gp50 OS=Suid herpesvirus 1 (strain
           Rice) PE=3 SV=1
          Length = 402

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = -2

Query: 121 SPNPRPSQLRPGARPRQKGRSGQCTPKEADRSPRP 17
           SP PRP   RP  RPR K      TP   DR P P
Sbjct: 266 SPRPRP---RPRPRPRPKPEPAPATPAPPDRLPEP 297


>sp|Q3AHW1|IF2_SYNSC Translation initiation factor IF-2
           OS=Synechococcus sp. (strain CC9605) GN=infB PE=3 SV=1
          Length = 1104

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 130 KVTSPNPRPSQLRPGARPRQKGRSGQCTPKEADRSPRPEI 11
           K T+P PRP+  RP  RP   G   + TP +    P+P+I
Sbjct: 186 KPTAPTPRPTPARPTPRPAGAGSPARPTPGQG--QPKPQI 223


>sp|P36338|UL47_BHV1C Tegument protein UL47 OS=Bovine herpesvirus
           1.1 (strain Cooper) GN=VP8 PE=3 SV=1
          Length = 739

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -2

Query: 124 TSPNPRPSQLRPGARPRQKGRSGQCTPKEADRSPRPEIQ 8
           T P  RPS  R   RP + GR G+  P+   R PRP  Q
Sbjct: 21  THPFQRPSARRSAGRPARCGRRGRGAPRV--RRPRPYFQ 57


>sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4
           OS=Schizosaccharomyces pombe GN=orc4 PE=1 SV=1
          Length = 972

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 112 PRPSQLRPGARPRQKGRSGQCTPKEADRSPRPEIQ 8
           P PS LR    PR++GR  +  PK  D    P I+
Sbjct: 89  PSPSPLRLNEAPRRRGRPRKYPPKPIDEGSEPIIK 123


>sp|Q9NPZ5|B3GA2_HUMAN Galactosylgalactosylxylosylprotein
           3-beta-glucuronosyltransferase 2 OS=Homo sapiens
           GN=B3GAT2 PE=1 SV=2
          Length = 323

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 93  GQERVPDRKGGAASAHQKRRTARPAPR 13
           G  R+P R+GG A   QKR  +RP P+
Sbjct: 48  GGARLPLRRGGPAHGTQKRNQSRPQPQ 74


>sp|P26550|VE4_HPV5B Probable protein E4 OS=Human papillomavirus
           type 5b GN=E4 PE=4 SV=1
          Length = 245

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 130 KVTSPNPRPSQLRPGARPRQKGRSGQCTPKEADRSP 23
           +  SP P P    PG  PR+  R G   P +ADR P
Sbjct: 93  RAPSPKPTPLGPPPGPGPRRSARLG---PLQADRDP 125


>sp|Q9H252|KCNH6_HUMAN Potassium voltage-gated channel subfamily H
           member 6 OS=Homo sapiens GN=KCNH6 PE=2 SV=1
          Length = 994

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 130 KVTSPNPR-PSQLRPGARPRQKGRSGQCTPKEADRSPR 20
           + TSP PR P    P A+    G    C+PK  + SPR
Sbjct: 880 ETTSPGPRLPQGFLPPAQTPSYGDLDDCSPKHRNSSPR 917


>sp|Q5KAI2|DBP7_CRYNE ATP-dependent RNA helicase DBP7
           OS=Cryptococcus neoformans GN=DBP7 PE=3 SV=1
          Length = 948

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -1

Query: 128 SNIAESASQP----IKARSASPTERAERPVHTKRGGPLAP 21
           SN+ +SAS P    IK R++ PT   ERP    + GP  P
Sbjct: 116 SNVPKSASIPAPATIKHRTSLPTNAFERPPLPPQAGPSRP 155
tr_hit_id B6MF34
Definition tr|B6MF34|B6MF34_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 43
Score (bit) 39.7
E-value 0.075
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947848|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_F12, 5'
         (131 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6MF34|B6MF34_BRAFL Putative uncharacterized protein OS=Branc...    40   0.075
tr|Q742L3|Q742L3_MYCPA Putative uncharacterized protein OS=Mycob...    35   1.4  
tr|A8TNQ9|A8TNQ9_9PROT Putative uncharacterized protein OS=alpha...    33   5.4  
tr|A0QBI2|A0QBI2_MYCA1 Putative uncharacterized protein OS=Mycob...    33   7.0  
tr|A6SYZ7|A6SYZ7_JANMA Uncharacterized conserved protein OS=Jant...    33   9.2  

>tr|B6MF34|B6MF34_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_122937 PE=4 SV=1
          Length = 291

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 21/43 (48%), Positives = 26/43 (60%)
 Frame = -2

Query: 130 KVTSPNPRPSQLRPGARPRQKGRSGQCTPKEADRSPRPEIQLR 2
           KV +P PR +QLR   R R++G     T   ADR P P+IQLR
Sbjct: 247 KVNAPAPRGAQLRGPGRIRREGPGRAVTRLAADRKPGPKIQLR 289


>tr|Q742L3|Q742L3_MYCPA Putative uncharacterized protein
           OS=Mycobacterium paratuberculosis GN=MAP_0822c PE=4 SV=1
          Length = 254

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -1

Query: 104 QPIKARSASPTERAERPVHTKRGGPLAP 21
           +P K  +A P E  E+PVHT+RG P+ P
Sbjct: 212 EPAKPPAAEPAEPEEKPVHTRRGKPVIP 239


>tr|A8TNQ9|A8TNQ9_9PROT Putative uncharacterized protein OS=alpha
           proteobacterium BAL199 GN=BAL199_12316 PE=4 SV=1
          Length = 893

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -2

Query: 109 RPSQLRPGARPRQKGRSGQCTPKEADRSPR 20
           +P + RPG R  Q+G++G  TP+ ADRS R
Sbjct: 690 QPREHRPGQRSGQQGQAGDGTPQGADRSGR 719


>tr|A0QBI2|A0QBI2_MYCA1 Putative uncharacterized protein
           OS=Mycobacterium avium (strain 104) GN=MAV_1010 PE=4
           SV=1
          Length = 259

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 116 ESASQPI-KARSASPTERAERPVHTKRGGPLAP 21
           E A  P  +A +A P E  E+PVHT+RG P+ P
Sbjct: 212 EPAKPPTAEAPAAEPAEPEEKPVHTRRGKPVIP 244


>tr|A6SYZ7|A6SYZ7_JANMA Uncharacterized conserved protein
           OS=Janthinobacterium sp. (strain Marseille)
           (Minibacterium massiliensis) GN=mma_1804 PE=4 SV=1
          Length = 483

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 130 KVTSPNPRPSQLRPGARPRQKGRSGQCTPKEADRSPRP 17
           ++T P+  P  ++PGARP   G +GQ  P+    +PRP
Sbjct: 354 QMTRPHFSPGDMQPGARP--PGNAGQHRPERQQGNPRP 389