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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947850
Clone id YMU02A01NGRM0001_G04
Library
Length 239
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRM0001_G04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATAT
TTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGGCGGGGCGAGCGGTCCGCC
TCTTTTGGTGTGCACTGGTCGCTCCGCCCTTTCTGTCGGGGACGCGCTCCTGGCCTTAAT
TGGCTGGGACGCGGATTCGGCGATGTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P07645
Definition sp|P07645|VGLD_SUHVR Protein gp50 OS=Suid herpesvirus 1 (strain Rice)
Align length 35
Score (bit) 32.3
E-value 0.75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947850|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_G04, 5'
         (209 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P07645|VGLD_SUHVR Protein gp50 OS=Suid herpesvirus 1 (strain ...    32   0.75 
sp|Q9H252|KCNH6_HUMAN Potassium voltage-gated channel subfamily ...    31   1.7  
sp|Q3AHW1|IF2_SYNSC Translation initiation factor IF-2 OS=Synech...    31   1.7  
sp|Q7TQM5|KPRP_RAT Keratinocyte proline-rich protein OS=Rattus n...    30   2.9  
sp|Q1DQC1|PAN1_COCIM Actin cytoskeleton-regulatory complex prote...    30   4.9  
sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4 OS=Sch...    30   4.9  
sp|A7Z026|LRC68_BOVIN Leucine-rich repeat-containing protein 68 ...    30   4.9  
sp|Q8K4G1|LTBP4_MOUSE Latent-transforming growth factor beta-bin...    29   6.4  
sp|Q66K74|MAP1S_HUMAN Microtubule-associated protein 1S OS=Homo ...    29   8.3  
sp|Q9NPZ5|B3GA2_HUMAN Galactosylgalactosylxylosylprotein 3-beta-...    29   8.3  

>sp|P07645|VGLD_SUHVR Protein gp50 OS=Suid herpesvirus 1 (strain
           Rice) PE=3 SV=1
          Length = 402

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = -1

Query: 203 SPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRP 99
           SP PRP   RP  RPR K      TP   DR P P
Sbjct: 266 SPRPRP---RPRPRPRPKPEPAPATPAPPDRLPEP 297


>sp|Q9H252|KCNH6_HUMAN Potassium voltage-gated channel subfamily H
           member 6 OS=Homo sapiens GN=KCNH6 PE=2 SV=1
          Length = 994

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 206 TSPNPR-PSQLRPGARPRQKGRSDQCTPKEADRSPR 102
           TSP PR P    P A+    G  D C+PK  + SPR
Sbjct: 882 TSPGPRLPQGFLPPAQTPSYGDLDDCSPKHRNSSPR 917


>sp|Q3AHW1|IF2_SYNSC Translation initiation factor IF-2
           OS=Synechococcus sp. (strain CC9605) GN=infB PE=3 SV=1
          Length = 1104

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 206 TSPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPEI 93
           T+P PRP+  RP  RP   G   + TP +    P+P+I
Sbjct: 188 TAPTPRPTPARPTPRPAGAGSPARPTPGQG--QPKPQI 223


>sp|Q7TQM5|KPRP_RAT Keratinocyte proline-rich protein OS=Rattus
           norvegicus GN=Kprp PE=2 SV=1
          Length = 699

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -1

Query: 200 PNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPE 96
           P PRP    P   PR + R D C   E    PRPE
Sbjct: 466 PRPRPEPC-PSPEPRPRPRPDPCPSPELRPRPRPE 499


>sp|Q1DQC1|PAN1_COCIM Actin cytoskeleton-regulatory complex protein
            PAN1 OS=Coccidioides immitis GN=PAN1 PE=3 SV=1
          Length = 1485

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 209  VTSPNPRPSQLRPGARPRQKGRSDQCTPKEADRS 108
            VTSP P+PS  +P   P +K R+D     EA ++
Sbjct: 996  VTSPPPKPSSKKPPPPPSRKVRTDVTESVEAKKA 1029


>sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4
           OS=Schizosaccharomyces pombe GN=orc4 PE=1 SV=1
          Length = 972

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 194 PRPSQLRPGARPRQKGRSDQCTPKEADRSPRPEIQ 90
           P PS LR    PR++GR  +  PK  D    P I+
Sbjct: 89  PSPSPLRLNEAPRRRGRPRKYPPKPIDEGSEPIIK 123


>sp|A7Z026|LRC68_BOVIN Leucine-rich repeat-containing protein 68
           OS=Bos taurus GN=LRRC68 PE=2 SV=1
          Length = 699

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -3

Query: 180 IKARSASPTERAERPVHTKRGGPLAPPRD---PTTSF 79
           +  R  SP ERAE PV     GP++PP     PT+ F
Sbjct: 575 VVTRVESPPERAEPPVPPAPPGPVSPPASASPPTSPF 611


>sp|Q8K4G1|LTBP4_MOUSE Latent-transforming growth factor
           beta-binding protein 4 OS=Mus musculus GN=Ltbp4 PE=2
           SV=1
          Length = 1666

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 200 PNPRP-SQLRPGARPRQKGRSDQCTPKEADRSPRPEIQ 90
           P PRP S+ RP  RPR + R    +    +  PRPE Q
Sbjct: 527 PRPRPESRPRPEPRPRPEPRPQPESQPRPESRPRPESQ 564


>sp|Q66K74|MAP1S_HUMAN Microtubule-associated protein 1S OS=Homo
           sapiens GN=MAP1S PE=1 SV=2
          Length = 1059

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
 Frame = -1

Query: 197 NPRPSQLRPGARPRQKGRS--------DQCTPKEADRSPRPEI 93
           +PRP Q RPG   ++  R+        +  TP+E  + P+P +
Sbjct: 491 HPRPGQERPGVARKEPARAEAPRKTEKEAKTPRELKKDPKPSV 533


>sp|Q9NPZ5|B3GA2_HUMAN Galactosylgalactosylxylosylprotein
           3-beta-glucuronosyltransferase 2 OS=Homo sapiens
           GN=B3GAT2 PE=1 SV=2
          Length = 323

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 175 GQERVPDRKGGATSAHQKRRTARPAPRSNYEL 80
           G  R+P R+GG     QKR  +RP P+   +L
Sbjct: 48  GGARLPLRRGGPAHGTQKRNQSRPQPQPEPQL 79
tr_hit_id A8JJG4
Definition tr|A8JJG4|A8JJG4_CHLRE Predicted protein OS=Chlamydomonas reinhardtii
Align length 34
Score (bit) 73.9
E-value 4.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947850|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_G04, 5'
         (209 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8JJG4|A8JJG4_CHLRE Predicted protein OS=Chlamydomonas reinha...    74   4e-12
tr|A8DVV5|A8DVV5_NEMVE Predicted protein OS=Nematostella vectens...    45   0.002
tr|B6MF34|B6MF34_BRAFL Putative uncharacterized protein OS=Branc...    42   0.020
tr|Q742L3|Q742L3_MYCPA Putative uncharacterized protein OS=Mycob...    35   1.4  
tr|A2HW58|A2HW58_TRIVA Putative uncharacterized protein OS=Trich...    33   5.4  
tr|A2GSA9|A2GSA9_TRIVA Putative uncharacterized protein OS=Trich...    33   5.4  
tr|A0QBI2|A0QBI2_MYCA1 Putative uncharacterized protein OS=Mycob...    33   7.0  
tr|B6Q8Q7|B6Q8Q7_PENMA Kinesin family protein (KipA), putative O...    33   9.1  

>tr|A8JJG4|A8JJG4_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_155068 PE=4 SV=1
          Length = 87

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 28/34 (82%), Positives = 29/34 (85%)
 Frame = -2

Query: 103 APRSNYELFNCNNLNIRYWSWNYRGCWHQTCPPM 2
           A   +  LFNCNNLNIRYWSWNYRGCWHQTCPPM
Sbjct: 51  ADSESQTLFNCNNLNIRYWSWNYRGCWHQTCPPM 84


>tr|A8DVV5|A8DVV5_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g225826 PE=4 SV=1
          Length = 135

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 46  SWNYRGCWHQTCPPM 2
           SWNYRGCWHQTCPPM
Sbjct: 118 SWNYRGCWHQTCPPM 132


>tr|B6MF34|B6MF34_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_122937 PE=4 SV=1
          Length = 291

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 22/44 (50%), Positives = 27/44 (61%)
 Frame = -1

Query: 209 VTSPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPEIQLRAF 78
           V +P PR +QLR   R R++G     T   ADR P P+IQLRAF
Sbjct: 248 VNAPAPRGAQLRGPGRIRREGPGRAVTRLAADRKPGPKIQLRAF 291


>tr|Q742L3|Q742L3_MYCPA Putative uncharacterized protein
           OS=Mycobacterium paratuberculosis GN=MAP_0822c PE=4 SV=1
          Length = 254

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 186 QPIKARSASPTERAERPVHTKRGGPLAP 103
           +P K  +A P E  E+PVHT+RG P+ P
Sbjct: 212 EPAKPPAAEPAEPEEKPVHTRRGKPVIP 239


>tr|A2HW58|A2HW58_TRIVA Putative uncharacterized protein
          OS=Trichomonas vaginalis G3 GN=TVAG_588880 PE=4 SV=1
          Length = 76

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -2

Query: 46 SWNYRGCWHQTCP 8
          SWNYR CWHQT P
Sbjct: 7  SWNYRSCWHQTGP 19


>tr|A2GSA9|A2GSA9_TRIVA Putative uncharacterized protein
          OS=Trichomonas vaginalis G3 GN=TVAG_049350 PE=4 SV=1
          Length = 76

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -2

Query: 46 SWNYRGCWHQTCP 8
          SWNYR CWHQT P
Sbjct: 7  SWNYRSCWHQTGP 19


>tr|A0QBI2|A0QBI2_MYCA1 Putative uncharacterized protein
           OS=Mycobacterium avium (strain 104) GN=MAV_1010 PE=4
           SV=1
          Length = 259

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 198 ESASQPI-KARSASPTERAERPVHTKRGGPLAP 103
           E A  P  +A +A P E  E+PVHT+RG P+ P
Sbjct: 212 EPAKPPTAEAPAAEPAEPEEKPVHTRRGKPVIP 244


>tr|B6Q8Q7|B6Q8Q7_PENMA Kinesin family protein (KipA), putative
           OS=Penicillium marneffei ATCC 18224 GN=PMAA_069540 PE=4
           SV=1
          Length = 976

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
 Frame = -1

Query: 203 SPNPRPSQLRPGARPRQKGR------SDQCTPKEADRSPRPEIQLRAF 78
           S +P PS+LRP ARP   G       S   TP   D+S R  + + AF
Sbjct: 42  SASPSPSKLRPPARPSLGGNGSMRSISGTTTPNGTDKSLRRSVSIAAF 89