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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947864
Clone id YMU02A01NGRM0001_H07
Library
Length 267
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRM0001_H07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCTAATAGAGAAAGAGACTGTGGATGGTGAGGAATTTATAAGCCTCTTCATGGACAACAA
AGCTGAGCTTTATTTAGCTTGATTATGATCACACTGAGATTGTTGTGTTGTTAGCTTGGC
TGGGAAGCCAAGGTTTGTATGCATCTTTGTATCAATGTATAGTAAGTCCAATAGGAAACG
TTGCCATTTCAAACATCATTTTAATCTGAAATCTGGGATGGTTGAAAAGTTCTGCTCGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O82150
Definition sp|O82150|FTSH_TOBAC Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum
Align length 26
Score (bit) 47.0
E-value 3.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947864|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_H07, 5'
         (238 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O82150|FTSH_TOBAC Cell division protease ftsH homolog, chloro...    47   3e-05
sp|Q9BAE0|FTSH_MEDSA Cell division protease ftsH homolog, chloro...    47   4e-05
sp|Q39102|FTSH1_ARATH Cell division protease ftsH homolog 1, chl...    45   9e-05
sp|Q9FH02|FTSH5_ARATH Cell division protease ftsH homolog 5, chl...    45   1e-04
sp|Q5Z974|FTSH1_ORYSJ Cell division protease ftsH homolog 1, chl...    44   3e-04
sp|P72991|FTSH4_SYNY3 Cell division protease ftsH homolog 4 OS=S...    30   3.8  

>sp|O82150|FTSH_TOBAC Cell division protease ftsH homolog,
           chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2
          Length = 714

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 21/26 (80%), Positives = 25/26 (96%)
 Frame = +2

Query: 2   LIEKETVDGEEFISLFMDNKAELYLA 79
           LIEKETVDGEEF+SLF+D KAELY++
Sbjct: 682 LIEKETVDGEEFMSLFIDGKAELYIS 707


>sp|Q9BAE0|FTSH_MEDSA Cell division protease ftsH homolog,
           chloroplastic OS=Medicago sativa GN=FTSH PE=2 SV=1
          Length = 706

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 21/26 (80%), Positives = 25/26 (96%)
 Frame = +2

Query: 2   LIEKETVDGEEFISLFMDNKAELYLA 79
           LIEKETVDGEEF+SLF+D KAELY++
Sbjct: 681 LIEKETVDGEEFMSLFIDGKAELYVS 706


>sp|Q39102|FTSH1_ARATH Cell division protease ftsH homolog 1,
           chloroplastic OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2
          Length = 716

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 20/26 (76%), Positives = 25/26 (96%)
 Frame = +2

Query: 2   LIEKETVDGEEFISLFMDNKAELYLA 79
           LIEKETVDGEEF+SLF+D +AELY++
Sbjct: 691 LIEKETVDGEEFMSLFIDGQAELYIS 716


>sp|Q9FH02|FTSH5_ARATH Cell division protease ftsH homolog 5,
           chloroplastic OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1
          Length = 704

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 20/26 (76%), Positives = 25/26 (96%)
 Frame = +2

Query: 2   LIEKETVDGEEFISLFMDNKAELYLA 79
           LIEKETVDGEEF+SLF+D +AELY++
Sbjct: 679 LIEKETVDGEEFMSLFIDGQAELYVS 704


>sp|Q5Z974|FTSH1_ORYSJ Cell division protease ftsH homolog 1,
           chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1
           PE=2 SV=1
          Length = 686

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 19/26 (73%), Positives = 25/26 (96%)
 Frame = +2

Query: 2   LIEKETVDGEEFISLFMDNKAELYLA 79
           L+EKETVDGEEF+SLF+D +AEL++A
Sbjct: 661 LMEKETVDGEEFMSLFIDGQAELFVA 686


>sp|P72991|FTSH4_SYNY3 Cell division protease ftsH homolog 4
           OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3
           SV=1
          Length = 616

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 2   LIEKETVDGEEFISLFMDNKAELYL 76
           L+EKETVD EE  +L  +N A+L L
Sbjct: 590 LVEKETVDSEELQTLLANNNAKLAL 614
tr_hit_id A1KXM7
Definition tr|A1KXM7|A1KXM7_SOLLC FtsH-like protein OS=Solanum lycopersicum
Align length 26
Score (bit) 47.0
E-value 0.0005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947864|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_H07, 5'
         (238 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A1KXM7|A1KXM7_SOLLC FtsH-like protein OS=Solanum lycopersicum...    47   5e-04
tr|A7NVT2|A7NVT2_VITVI Chromosome chr18 scaffold_1, whole genome...    46   8e-04
tr|A5B2F0|A5B2F0_VITVI Putative uncharacterized protein OS=Vitis...    46   8e-04
tr|B8B2K6|B8B2K6_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.005
tr|B7EAD1|B7EAD1_ORYSJ cDNA clone:J013001F19, full insert sequen...    44   0.005
tr|A9RHM7|A9RHM7_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.007

>tr|A1KXM7|A1KXM7_SOLLC FtsH-like protein OS=Solanum lycopersicum
           PE=2 SV=1
          Length = 708

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 21/26 (80%), Positives = 25/26 (96%)
 Frame = +2

Query: 2   LIEKETVDGEEFISLFMDNKAELYLA 79
           LIEKETVDGEEF+SLF+D KAELY++
Sbjct: 683 LIEKETVDGEEFMSLFIDGKAELYIS 708


>tr|A7NVT2|A7NVT2_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015560001
           PE=4 SV=1
          Length = 706

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 21/26 (80%), Positives = 25/26 (96%)
 Frame = +2

Query: 2   LIEKETVDGEEFISLFMDNKAELYLA 79
           LIEKETVDGEEF+SLF+D KAEL++A
Sbjct: 681 LIEKETVDGEEFMSLFIDGKAELFVA 706


>tr|A5B2F0|A5B2F0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_000978 PE=4 SV=1
          Length = 663

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 21/26 (80%), Positives = 25/26 (96%)
 Frame = +2

Query: 2   LIEKETVDGEEFISLFMDNKAELYLA 79
           LIEKETVDGEEF+SLF+D KAEL++A
Sbjct: 638 LIEKETVDGEEFMSLFIDGKAELFVA 663


>tr|B8B2K6|B8B2K6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24516 PE=4 SV=1
          Length = 630

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 19/26 (73%), Positives = 25/26 (96%)
 Frame = +2

Query: 2   LIEKETVDGEEFISLFMDNKAELYLA 79
           L+EKETVDGEEF+SLF+D +AEL++A
Sbjct: 605 LMEKETVDGEEFMSLFIDGQAELFVA 630


>tr|B7EAD1|B7EAD1_ORYSJ cDNA clone:J013001F19, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 686

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 19/26 (73%), Positives = 25/26 (96%)
 Frame = +2

Query: 2   LIEKETVDGEEFISLFMDNKAELYLA 79
           L+EKETVDGEEF+SLF+D +AEL++A
Sbjct: 661 LMEKETVDGEEFMSLFIDGQAELFVA 686


>tr|A9RHM7|A9RHM7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_202568 PE=4 SV=1
          Length = 647

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 18/25 (72%), Positives = 24/25 (96%)
 Frame = +2

Query: 2   LIEKETVDGEEFISLFMDNKAELYL 76
           L+EKETVDGEEF++LF+D +AELY+
Sbjct: 622 LLEKETVDGEEFLNLFIDGQAELYV 646