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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947865
Clone id YMU02A01NGRM0001_H08
Library
Length 614
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRM0001_H08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CCTTTGAGTGGTATCTAGACACAGTTACCCTCCAGCAGTGCAGGTTTAATGGCGTGCTAG
CATCGCATCAATTTTTCAAGTGAGGACTCGGTGCAAATTCAAGGTAGCCCATTGCAGGAA
ACTAGCCTTTTGTGAGCCCATGGCGAAGGCTTTTGAACGCATTAAGTTTGTGGAATTCTA
AGCATAGCCGGGTTTCTGCCGTTCCTTGAGTGCAGAGACCCCCACAGACGCAGGTTTTTT
GGAGATCTGTTGCGCCAACTTCGTGCATTGCAAAGCTTCTGATGGAGATTTGGGCTCTCA
GAGTGCGGTCGTGCCTTGCATTCCTGCTTCTTGGGTGGCCAGTATGCTTTGGCTCGCCCT
TGACCTCCATATCCACCATCTGTGAAAGGCCGAGGCTAGAAGGAGTTGTTGAAAATAATT
GGTGCCCCACAGATCATGATTATGAGTTACAGACAAAGGTCTTCCCAAAGCGAGGAGTTT
TTGAGGTAAATGGGACAGATCTAGAGAGATACTTGCATGTTTTGAATTCACGAGAGACCA
TGTATGCAGCTGTCCTTGTTTATGCAAGATGGTGCCCTTTTTCAAGGGCCTTGTTGCCGT
TGTTCAATTCTCTT
■■Homology search results ■■ -
sp_hit_id Q96J42
Definition sp|Q96J42|TXD15_HUMAN Thioredoxin domain-containing protein 15 OS=Homo sapiens
Align length 81
Score (bit) 38.9
E-value 0.021
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947865|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_H08, 5'
         (614 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96J42|TXD15_HUMAN Thioredoxin domain-containing protein 15 O...    39   0.021
sp|Q5BJT4|TXD15_RAT Thioredoxin domain-containing protein 15 OS=...    35   0.40 
sp|Q6P6J9|TXD15_MOUSE Thioredoxin domain-containing protein 15 O...    35   0.40 
sp|Q17688|TXNDL_CAEEL Thioredoxin domain-containing protein C06A...    33   1.2  
sp|Q92104|CP11B_RANCA Cytochrome P450 11B, mitochondrial OS=Rana...    32   2.6  
sp|Q9BS26|TXND4_HUMAN Thioredoxin domain-containing protein 4 OS...    32   3.4  
sp|Q0IHI1|TXD15_XENLA Thioredoxin domain-containing protein 15 O...    31   4.4  
sp|P92980|APR3_ARATH 5'-adenylylsulfate reductase 3, chloroplast...    31   4.4  
sp|Q5N8X6|BGAL3_ORYSJ Beta-galactosidase 3 OS=Oryza sativa subsp...    31   5.8  
sp|Q9D1Q6|TXND4_MOUSE Thioredoxin domain-containing protein 4 OS...    30   7.5  
sp|Q3T0L2|TXND4_BOVIN Thioredoxin domain-containing protein 4 OS...    30   9.8  

>sp|Q96J42|TXD15_HUMAN Thioredoxin domain-containing protein 15
           OS=Homo sapiens GN=TXNDC15 PE=2 SV=1
          Length = 360

 Score = 38.9 bits (89), Expect = 0.021
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
 Frame = +3

Query: 405 VVENNWCPTDHDYELQTKVFPKRGVFEVNGTDLERY-LHVLNSRETMY----------AA 551
           V E++  PT+     ++   PK    E N T LE + L +LN  + +             
Sbjct: 153 VAESDAAPTEDSNNTESLKSPKVNCEERNITGLENFTLKILNMSQDLMDFLNPNGSDCTL 212

Query: 552 VLVYARWCPFSRALLPLFNSL 614
           VL Y  WC FS +L P FNSL
Sbjct: 213 VLFYTPWCRFSASLAPHFNSL 233


>sp|Q5BJT4|TXD15_RAT Thioredoxin domain-containing protein 15
           OS=Rattus norvegicus GN=Txndc15 PE=2 SV=1
          Length = 343

 Score = 34.7 bits (78), Expect = 0.40
 Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
 Frame = +3

Query: 402 GVVENNWCPTDHDYELQTKVFPKRGVFEVNGTDLERY-LHVLNSRETMY----------A 548
           GV E     T+      +   PK    E N T LE + L +LN  + +            
Sbjct: 135 GVAEAEPVATEDANSTDSLKSPKVNCEERNVTGLENFTLKILNMSQDLMDFLNPNGSDCT 194

Query: 549 AVLVYARWCPFSRALLPLFNSL 614
            VL Y  WC FS +L P FNSL
Sbjct: 195 LVLFYTPWCRFSASLAPHFNSL 216


>sp|Q6P6J9|TXD15_MOUSE Thioredoxin domain-containing protein 15
           OS=Mus musculus GN=Txndc15 PE=2 SV=1
          Length = 344

 Score = 34.7 bits (78), Expect = 0.40
 Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
 Frame = +3

Query: 402 GVVENNWCPTDHDYELQTKVFPKRGVFEVNGTDLERY-LHVLNSRETMY----------A 548
           GV E     T+      +   PK    E N T LE + L +LN  + +            
Sbjct: 136 GVTEAEPVATEDANSTDSLKSPKVNCEERNVTGLENFTLKILNMSQDLMDFLNPNGSDCT 195

Query: 549 AVLVYARWCPFSRALLPLFNSL 614
            VL Y  WC FS +L P FNSL
Sbjct: 196 LVLFYTPWCRFSASLAPHFNSL 217


>sp|Q17688|TXNDL_CAEEL Thioredoxin domain-containing protein C06A6.5
           OS=Caenorhabditis elegans GN=C06A6.5 PE=1 SV=2
          Length = 413

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 516 HVLNSRETMYAAVLVYARWCPFSRALLPLF 605
           HVL S + ++ A    A WCPFSR L P+F
Sbjct: 37  HVLGSAQVVFVAFC--ADWCPFSRRLKPIF 64


>sp|Q92104|CP11B_RANCA Cytochrome P450 11B, mitochondrial OS=Rana
           catesbeiana GN=CYP11B PE=2 SV=1
          Length = 517

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 197 CRSLSAETPTDAGFLEICCANFVHCKASDGDLGSQSAVVPCIPAS 331
           CR+L   +P   GF  +  A  +H    DG L SQ+     IP +
Sbjct: 17  CRTLDTTSPLWTGFSRLSTAPLIHEAREDGSLASQTLPYEAIPTT 61


>sp|Q9BS26|TXND4_HUMAN Thioredoxin domain-containing protein 4
           OS=Homo sapiens GN=TXNDC4 PE=1 SV=1
          Length = 406

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 483 EVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRALLPLF 605
           E+   D E    +LN+ +   A V  YA WC FS+ L P+F
Sbjct: 30  EITSLDTENIDEILNNADV--ALVNFYADWCRFSQMLHPIF 68


>sp|Q0IHI1|TXD15_XENLA Thioredoxin domain-containing protein 15
           OS=Xenopus laevis GN=txndc15 PE=2 SV=1
          Length = 342

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 513 LHVLNSRETMYAAVLVYARWCPFSRALLPLFNSL 614
           +  LN   +    VL Y  WC FS  L P FN+L
Sbjct: 182 MEFLNPNSSECTLVLFYTPWCRFSAGLAPHFNTL 215


>sp|P92980|APR3_ARATH 5'-adenylylsulfate reductase 3, chloroplastic
           OS=Arabidopsis thaliana GN=APR3 PE=2 SV=2
          Length = 458

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 459 VFPKRGVFEVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRALLPLFNSL 614
           +F    V  ++   +E  + + N +E     V++YA WCPF +A+   F+ L
Sbjct: 342 IFNSENVVNLSRQGIENLMKLENRKEAWI--VVLYAPWCPFCQAMEASFDEL 391


>sp|Q5N8X6|BGAL3_ORYSJ Beta-galactosidase 3 OS=Oryza sativa subsp.
           japonica GN=Os01g0875500 PE=2 SV=1
          Length = 851

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
 Frame = +2

Query: 137 PMAKAFERIKFVEF*A*PGFCRSL---SAETPTDAGFLEICCANFVHCKASDGDLGSQSA 307
           P  K+   +KFV F    G CRS    S   P     +E  C N   C  S  D G    
Sbjct: 776 PKGKSISSVKFVSFGNPSGTCRSYQQGSCHHPNSISVVEKACLNMNGCTVSLSDEGFGED 835

Query: 308 VVP 316
           + P
Sbjct: 836 LCP 838


>sp|Q9D1Q6|TXND4_MOUSE Thioredoxin domain-containing protein 4
           OS=Mus musculus GN=Txndc4 PE=1 SV=1
          Length = 406

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 483 EVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRALLPLF 605
           E+   D E    +LN+ +   A V  YA WC FS+ L P+F
Sbjct: 30  EIASLDSENIDEILNNADV--ALVNFYADWCRFSQMLHPIF 68
tr_hit_id A9S8B2
Definition tr|A9S8B2|A9S8B2_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 46
Score (bit) 46.2
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947865|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_H08, 5'
         (614 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S8B2|A9S8B2_PHYPA Predicted protein (Fragment) OS=Physcomit...    46   0.002
tr|A9NUT7|A9NUT7_PICSI Putative uncharacterized protein OS=Picea...    46   0.002
tr|Q5EUC7|Q5EUC7_MAIZE Adenosine 5'-phosphosulfate reductase 3 (...    42   0.022
tr|B6TY43|B6TY43_MAIZE APRL3-Zea mays adenosine 5'-phosphosulfat...    42   0.022
tr|B4FL05|B4FL05_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.022
tr|Q9SRW3|Q9SRW3_ARATH F20H23.9 protein OS=Arabidopsis thaliana ...    41   0.048
tr|Q93YX4|Q93YX4_ARATH Putative uncharacterized protein At3g0386...    41   0.048
tr|A7NUY1|A7NUY1_VITVI Chromosome chr18 scaffold_1, whole genome...    39   0.18 
tr|Q5EUC6|Q5EUC6_MAIZE Adenosine 5'-phosphosulfate reductase 4 O...    39   0.24 
tr|Q5EUC4|Q5EUC4_MAIZE Adenosine 5'-phosphosulfate reductase 6 (...    39   0.24 
tr|B6TB09|B6TB09_MAIZE APRL6-Zea mays adenosine 5'-phosphosulfat...    39   0.24 
tr|Q7Z345|Q7Z345_HUMAN Putative uncharacterized protein DKFZp686...    39   0.24 
tr|B4DS52|B4DS52_HUMAN cDNA FLJ56237, highly similar to Homo sap...    39   0.24 
tr|Q84P95|Q84P95_ORYSJ Os02g0754900 protein OS=Oryza sativa subs...    39   0.31 
tr|Q2QP53|Q2QP53_ORYSJ Adenosine 5'-phosphosulfate reductase 6, ...    38   0.41 
tr|B8BMC3|B8BMC3_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.41 
tr|Q67VZ8|Q67VZ8_ORYSJ Os06g0220800 protein OS=Oryza sativa subs...    38   0.54 
tr|B8B416|B8B416_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.54 
tr|A2X9R3|A2X9R3_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.70 
tr|A5PLH0|A5PLH0_DANRE Zgc:165608 protein OS=Danio rerio GN=zgc:...    37   1.2  
tr|Q9SA00|Q9SA00_ARATH F21H2.1 protein (Putative uncharacterized...    37   1.2  
tr|B6SVA8|B6SVA8_MAIZE Protein phosphatase type 2A regulator/ si...    36   1.6  
tr|Q9ZPE9|Q9ZPE9_ARATH T3H13.4 protein (Putative uncharacterized...    36   2.0  
tr|Q0WT33|Q0WT33_ARATH Protein disulfide isomerase like protein ...    36   2.0  
tr|Q5EUC2|Q5EUC2_MAIZE Adenosine 5'-phosphosulfate reductase 8 O...    35   2.7  
tr|B6TNM3|B6TNM3_MAIZE APRL5-Zea mays adenosine 5'-phosphosulfat...    35   2.7  
tr|A1AUG6|A1AUG6_PELPD Putative uncharacterized protein OS=Pelob...    35   3.5  
tr|A7PW43|A7PW43_VITVI Chromosome chr8 scaffold_34, whole genome...    35   3.5  
tr|A3B9R5|A3B9R5_ORYSJ Putative uncharacterized protein OS=Oryza...    35   3.5  
tr|B4JFH6|B4JFH6_DROGR GH18264 OS=Drosophila grimshawi GN=GH1826...    35   4.5  

>tr|A9S8B2|A9S8B2_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_46378 PE=4 SV=1
          Length = 175

 Score = 46.2 bits (108), Expect = 0.002
 Identities = 21/46 (45%), Positives = 31/46 (67%)
 Frame = +3

Query: 477 VFEVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRALLPLFNSL 614
           V ++N T LE+ L +++S    Y AVL YA WCPFSR + P+++ L
Sbjct: 1   VVQLNETTLEKALDLVHSSNGTYMAVLHYATWCPFSRQVRPVYDVL 46


>tr|A9NUT7|A9NUT7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 317

 Score = 46.2 bits (108), Expect = 0.002
 Identities = 35/102 (34%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
 Frame = +3

Query: 315 LAFLLLGWPVCFGSPLTSISTICERPRLEGVVENNWCPTDHDYELQTKV--FPKRGVFEV 488
           L F L+G  V    PL      C  P L+    N     D D          P R V E+
Sbjct: 9   LQFSLMGMAVA--GPLG----FCPIPNLQDTFSNKCMAFDSDSPSHGAAGFLPDR-VREL 61

Query: 489 NGTDLERYLHVLNSRETMYAAVLVYARWCPFSRALLPLFNSL 614
           +   LE    +L      Y AVL YA WCPFS+   P+FN L
Sbjct: 62  DAVSLEAAFDILQRSSNTYIAVLFYASWCPFSKQCRPVFNVL 103


>tr|Q5EUC7|Q5EUC7_MAIZE Adenosine 5'-phosphosulfate reductase 3
           (Putative uncharacterized protein) OS=Zea mays GN=APRL3
           PE=2 SV=1
          Length = 323

 Score = 42.4 bits (98), Expect = 0.022
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = +3

Query: 474 GVFEVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRALLPLFNSL 614
           GV E +   L R +++L++ +  Y AVL YA WCPFS+   P F +L
Sbjct: 63  GVIEGDEVTLARAVNLLHANKDDYIAVLFYASWCPFSQECKPNFETL 109


>tr|B6TY43|B6TY43_MAIZE APRL3-Zea mays adenosine 5'-phosphosulfate
           reductase-like OS=Zea mays PE=2 SV=1
          Length = 324

 Score = 42.4 bits (98), Expect = 0.022
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = +3

Query: 474 GVFEVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRALLPLFNSL 614
           GV E +   L R +++L++ +  Y AVL YA WCPFS+   P F +L
Sbjct: 64  GVIEGDEVTLARAVNLLHANKDDYIAVLFYASWCPFSQECKPNFETL 110


>tr|B4FL05|B4FL05_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 188

 Score = 42.4 bits (98), Expect = 0.022
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = +3

Query: 474 GVFEVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRALLPLFNSL 614
           GV E +   L R +++L++ +  Y AVL YA WCPFS+   P F +L
Sbjct: 63  GVIEGDEVTLARAVNLLHANKDDYIAVLFYASWCPFSQECKPNFETL 109


>tr|Q9SRW3|Q9SRW3_ARATH F20H23.9 protein OS=Arabidopsis thaliana
           GN=F20H23.9 PE=4 SV=1
          Length = 318

 Score = 41.2 bits (95), Expect = 0.048
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = +3

Query: 483 EVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRALLPLFNSL 614
           EV+G  L+R +   +     Y +VL YA WCPFSRA+ P F+ L
Sbjct: 58  EVDGDSLDRLM--ASQHGNAYMSVLFYASWCPFSRAVRPKFDML 99


>tr|Q93YX4|Q93YX4_ARATH Putative uncharacterized protein At3g03860
           OS=Arabidopsis thaliana GN=At3g03860 PE=2 SV=1
          Length = 300

 Score = 41.2 bits (95), Expect = 0.048
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = +3

Query: 483 EVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRALLPLFNSL 614
           EV+G  L+R +   +     Y +VL YA WCPFSRA+ P F+ L
Sbjct: 58  EVDGDSLDRLM--ASQHGNAYMSVLFYASWCPFSRAVRPKFDML 99


>tr|A7NUY1|A7NUY1_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015227001
           PE=4 SV=1
          Length = 321

 Score = 39.3 bits (90), Expect = 0.18
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 474 GVFEVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRALLPLFNSL 614
           GV E +   L++ L +++     Y AVL YA WC FSR   P F+ L
Sbjct: 63  GVTEGDEVSLQKALDMVHKNTHEYVAVLFYASWCAFSRTCRPTFSIL 109


>tr|Q5EUC6|Q5EUC6_MAIZE Adenosine 5'-phosphosulfate reductase 4
           OS=Zea mays GN=APRL4 PE=2 SV=1
          Length = 321

 Score = 38.9 bits (89), Expect = 0.24
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +3

Query: 474 GVFEVNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRALLPLFNSL 614
           GV E +   L   +++L++ +  Y AVL YA WCPFS+   P F +L
Sbjct: 59  GVVEGDEFTLATAVNLLHANKDDYIAVLFYASWCPFSQECKPNFETL 105


>tr|Q5EUC4|Q5EUC4_MAIZE Adenosine 5'-phosphosulfate reductase 6
           (Putative uncharacterized protein) OS=Zea mays GN=APRL6
           PE=2 SV=1
          Length = 303

 Score = 38.9 bits (89), Expect = 0.24
 Identities = 20/43 (46%), Positives = 28/43 (65%)
 Frame = +3

Query: 486 VNGTDLERYLHVLNSRETMYAAVLVYARWCPFSRALLPLFNSL 614
           VNG +L   L +L+ +E  + AVL YA WCPFS  + P+F+ L
Sbjct: 65  VNGEEL---LRLLDGKEE-HTAVLFYASWCPFSERIRPVFDDL 103