DK947867 |
Clone id |
YMU02A01NGRM0001_H10 |
Library |
YMU02 |
Length |
453 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRM0001_H10. 5' end sequence. |
Accession |
DK947867 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL71Contig1 |
Sequence |
GCTGGGGATGAGTCTCACAAAGCCTCTACTGAGTTTGACACTACTGACAAGGACATAACT CCCATGGGTGGCTTTGCTCACTATGGTATCGTGAAGGAAGATTTTGTCATGATCAAAGGT TGCTGCATGGGCCCCAAGAAGAGAGTCATCACTCTTCGGAAGTCCCTTTACAAGCAGACT TCTCGCAGTGCCTTGGAGGAGATCAAGTTGAAGTTTATTGACACGTCATCTAAATTTGGG CATGGTCGCTTCCAGACTTCCCAGGAGAAGGCAAAAACTTTTGGCAGGGTGAAGTGAGTA CTTTTTAGGGAGGGGAGAAGCTAGTTGTTTTGGAAGAGTATTAATGAGACTTCAAAGCGG CCTTGGAACTGCTATTTTGTCTGAATTTCTCATTCTAATTCTCACTTAAATGTTTTATTG TCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P35684 |
Definition |
sp|P35684|RL3_ORYSJ 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica |
Align length |
98 |
Score (bit) |
162.0 |
E-value |
7.0e-40 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QC77 |
Definition |
tr|A7QC77|A7QC77_VITVI Chromosome undetermined scaffold_77, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
97 |
Score (bit) |
167.0 |
E-value |
2.0e-40 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947867|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRM0001_H10, 5' (423 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QC77|A7QC77_VITVI Chromosome undetermined scaffold_77, whol... 167 2e-40 tr|A5BAZ0|A5BAZ0_VITVI Putative uncharacterized protein OS=Vitis... 167 2e-40 tr|Q6TKQ9|Q6TKQ9_TOBAC Ribosomal protein L3B OS=Nicotiana tabacu... 167 3e-40 tr|A9NZI7|A9NZI7_PICSI Putative uncharacterized protein OS=Picea... 166 5e-40 tr|A5BU35|A5BU35_VITVI Putative uncharacterized protein (Chromos... 164 2e-39 tr|B4FFZ6|B4FFZ6_MAIZE 60S ribosomal protein L3 OS=Zea mays PE=2... 164 2e-39 tr|B4FBM9|B4FBM9_MAIZE Putative uncharacterized protein OS=Zea m... 164 2e-39 tr|Q7X744|Q7X744_WHEAT Ribosomal protein L3 (Ribosomal protein L... 164 3e-39 tr|A1YE31|A1YE31_WHEAT Ribosomal protein L3-A3 OS=Triticum aesti... 164 3e-39 tr|A9PCQ3|A9PCQ3_POPTR Putative uncharacterized protein OS=Popul... 163 3e-39 tr|A9NRB1|A9NRB1_PICSI Putative uncharacterized protein OS=Picea... 163 3e-39 tr|Q6TKR0|Q6TKR0_TOBAC Ribosomal protein L3A OS=Nicotiana tabacu... 163 4e-39 tr|Q7X748|Q7X748_WHEAT Ribosomal protein L3 (Ribosomal protein L... 162 6e-39 tr|Q9SXL7|Q9SXL7_CUCSA Csf-3 protein OS=Cucumis sativus GN=Csf-3... 162 8e-39 tr|Q53JG0|Q53JG0_ORYSJ 60S ribosomal protein L3, putative, expre... 162 1e-38 tr|Q0IPU6|Q0IPU6_ORYSJ Os12g0167900 protein OS=Oryza sativa subs... 162 1e-38 tr|A9P806|A9P806_POPTR Putative uncharacterized protein OS=Popul... 162 1e-38 tr|A5D934|A5D934_ORYSA Ribosomal protein L3B OS=Oryza sativa GN=... 162 1e-38 tr|A2ZIF8|A2ZIF8_ORYSI Putative uncharacterized protein OS=Oryza... 162 1e-38 tr|A2ZBV5|A2ZBV5_ORYSI Putative uncharacterized protein OS=Oryza... 162 1e-38 tr|Q2VCJ2|Q2VCJ2_SOLTU Ribosomal protein L3-like OS=Solanum tube... 161 1e-38 tr|A9TUZ9|A9TUZ9_PHYPA Predicted protein OS=Physcomitrella paten... 161 1e-38 tr|Q6V959|Q6V959_WHEAT Ribosomal protein L3 (Ribosomal protein L... 161 2e-38 tr|Q08G39|Q08G39_WHEAT Ribosomal protein L3 OS=Triticum aestivum... 161 2e-38 tr|A1YE34|A1YE34_WHEAT Ribosomal protein L3-B2 OS=Triticum aesti... 161 2e-38 tr|A9T2B3|A9T2B3_PHYPA Predicted protein OS=Physcomitrella paten... 160 3e-38 tr|Q9AT58|Q9AT58_LOLPR L3 ribosomal protein (Fragment) OS=Lolium... 159 5e-38 tr|Q6SKP4|Q6SKP4_SOLLC Ribosomal protein L3 OS=Solanum lycopersi... 159 6e-38 tr|A9SGV3|A9SGV3_PHYPA Predicted protein OS=Physcomitrella paten... 157 2e-37 tr|A9PB80|A9PB80_POPTR Putative uncharacterized protein OS=Popul... 157 3e-37
>tr|A7QC77|A7QC77_VITVI Chromosome undetermined scaffold_77, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035280001 PE=3 SV=1 Length = 219
Score = 167 bits (424), Expect = 2e-40 Identities = 77/97 (79%), Positives = 89/97 (91%) Frame = +1
Query: 4 GDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLYKQTS 183 G ESH A TEFD T+KDITPMGGF HYG+VK+D+++IKGCC+GPKKRV+TLR+SL KQTS Sbjct: 122 GQESHSAMTEFDRTEKDITPMGGFPHYGVVKDDYLLIKGCCVGPKKRVVTLRQSLLKQTS 181
Query: 184 RSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 294 R A+EEIKLKFIDTSSKFGHGRFQT+QEKAK FGR+K Sbjct: 182 RVAMEEIKLKFIDTSSKFGHGRFQTTQEKAKFFGRLK 218
>tr|A5BAZ0|A5BAZ0_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042376 PE=3 SV=1 Length = 389
Score = 167 bits (424), Expect = 2e-40 Identities = 77/97 (79%), Positives = 89/97 (91%) Frame = +1
Query: 4 GDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLYKQTS 183 G ESH A TEFD T+KDITPMGGF HYG+VK+D+++IKGCC+GPKKRV+TLR+SL KQTS Sbjct: 292 GQESHSAMTEFDRTEKDITPMGGFPHYGVVKDDYLLIKGCCVGPKKRVVTLRQSLLKQTS 351
Query: 184 RSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 294 R A+EEIKLKFIDTSSKFGHGRFQT+QEKAK FGR+K Sbjct: 352 RVAMEEIKLKFIDTSSKFGHGRFQTTQEKAKFFGRLK 388
>tr|Q6TKQ9|Q6TKQ9_TOBAC Ribosomal protein L3B OS=Nicotiana tabacum GN=RPL3B PE=2 SV=1 Length = 409
Score = 167 bits (422), Expect = 3e-40 Identities = 79/98 (80%), Positives = 88/98 (89%) Frame = +1
Query: 1 AGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLYKQT 180 AG ESH A TEFD T+KDITPMGGF HYGIVKEDF++IKGCC+GPKKRV+TLR+SL QT Sbjct: 311 AGQESHSAITEFDRTEKDITPMGGFPHYGIVKEDFLLIKGCCVGPKKRVVTLRQSLLNQT 370
Query: 181 SRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 294 SR ALEEIKLKFIDTSSKFGHGRFQT+QEK K +GR+K Sbjct: 371 SRVALEEIKLKFIDTSSKFGHGRFQTTQEKDKFYGRLK 408
>tr|A9NZI7|A9NZI7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 389
Score = 166 bits (420), Expect = 5e-40 Identities = 76/98 (77%), Positives = 90/98 (91%) Frame = +1
Query: 1 AGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLYKQT 180 A ESHKA TEFD T+KDITPMGGF HYG++K+D++MI+GCC+G KKRV+TLR+SL KQT Sbjct: 291 ADQESHKAMTEFDRTEKDITPMGGFPHYGVLKDDYIMIRGCCVGTKKRVVTLRQSLLKQT 350
Query: 181 SRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 294 SR+ALEEIKLKFIDTSSKFGHGRFQT+QEKAK FG++K Sbjct: 351 SRTALEEIKLKFIDTSSKFGHGRFQTTQEKAKIFGKLK 388
>tr|A5BU35|A5BU35_VITVI Putative uncharacterized protein (Chromosome chr18 scaffold_59, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00031743001 PE=3 SV=1 Length = 389
Score = 164 bits (416), Expect = 2e-39 Identities = 77/95 (81%), Positives = 87/95 (91%) Frame = +1
Query: 10 ESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLYKQTSRS 189 ESH A TEFD T+KDITPMGGF HYG+VK+D+VMIKGCC+GPKKRV+TLR+SL KQTSR Sbjct: 294 ESHTALTEFDRTEKDITPMGGFPHYGVVKDDYVMIKGCCVGPKKRVVTLRQSLLKQTSRV 353
Query: 190 ALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 294 ALEEIKLKFIDTSSKFGHGRFQT+QEK K +GR+K Sbjct: 354 ALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRMK 388
>tr|B4FFZ6|B4FFZ6_MAIZE 60S ribosomal protein L3 OS=Zea mays PE=2 SV=1 Length = 389
Score = 164 bits (415), Expect = 2e-39 Identities = 77/98 (78%), Positives = 88/98 (89%) Frame = +1
Query: 1 AGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLYKQT 180 AG E+H ASTEFD T+KDITPMGGF HYGIVK D++MIKGCC+GPKKRV+TLR+SL KQT Sbjct: 291 AGQETHDASTEFDRTEKDITPMGGFPHYGIVKGDYLMIKGCCVGPKKRVVTLRQSLLKQT 350
Query: 181 SRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 294 SR ALEEIKLKFIDTSSKFGHGRFQT+ EK + FG++K Sbjct: 351 SRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
>tr|B4FBM9|B4FBM9_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 389
Score = 164 bits (415), Expect = 2e-39 Identities = 77/98 (78%), Positives = 88/98 (89%) Frame = +1
Query: 1 AGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLYKQT 180 AG E+H ASTEFD T+KDITPMGGF HYGIVK D++MIKGCC+GPKKRV+TLR+SL KQT Sbjct: 291 AGQETHDASTEFDRTEKDITPMGGFPHYGIVKGDYLMIKGCCVGPKKRVVTLRQSLLKQT 350
Query: 181 SRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 294 SR ALEEIKLKFIDTSSKFGHGRFQT+ EK + FG++K Sbjct: 351 SRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
>tr|Q7X744|Q7X744_WHEAT Ribosomal protein L3 (Ribosomal protein L3-A1) OS=Triticum aestivum GN=RPL3 PE=2 SV=1 Length = 389
Score = 164 bits (414), Expect = 3e-39 Identities = 76/98 (77%), Positives = 88/98 (89%) Frame = +1
Query: 1 AGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLYKQT 180 +G ESH+A TEFD T+KDITPMGGF HYG+VK D++MIKGCC+GPKKRV+TLR+SL KQT Sbjct: 291 SGQESHEACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQT 350
Query: 181 SRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 294 SR ALEEIKLKFIDTSSKFGHGRFQT+ EK K +GR+K Sbjct: 351 SRLALEEIKLKFIDTSSKFGHGRFQTTDEKQKFYGRLK 388
>tr|A1YE31|A1YE31_WHEAT Ribosomal protein L3-A3 OS=Triticum aestivum GN=RPL3-A3 PE=2 SV=1 Length = 389
Score = 164 bits (414), Expect = 3e-39 Identities = 76/98 (77%), Positives = 88/98 (89%) Frame = +1
Query: 1 AGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLYKQT 180 +G ESH+A TEFD T+KDITPMGGF HYG+VK D++MIKGCC+GPKKRV+TLR+SL KQT Sbjct: 291 SGQESHEACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQT 350
Query: 181 SRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 294 SR ALEEIKLKFIDTSSKFGHGRFQT+ EK K +GR+K Sbjct: 351 SRLALEEIKLKFIDTSSKFGHGRFQTTDEKQKFYGRLK 388
>tr|A9PCQ3|A9PCQ3_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 389
Score = 163 bits (413), Expect = 3e-39 Identities = 75/97 (77%), Positives = 89/97 (91%) Frame = +1
Query: 4 GDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLYKQTS 183 G ESH A TE+D T+KDITP+GGF HYG+VKED++MIKGCC+GPKKRV+TLR+SL KQTS Sbjct: 292 GQESHCAVTEYDRTEKDITPIGGFPHYGVVKEDYLMIKGCCVGPKKRVVTLRQSLLKQTS 351
Query: 184 RSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 294 R A+EEIKLKFIDTSSKFGHGRFQT++EKAK +GR+K Sbjct: 352 RVAMEEIKLKFIDTSSKFGHGRFQTTEEKAKFYGRLK 388
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