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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947868
Clone id YMU02A01NGRM0001_H11
Library
Length 451
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRM0001_H11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGAATGAGAATGACGATGCTCCGGATTTCGAAGTCAAGGGCAACTTCTTCCAGCGCGAGG
CACAGATCTTCCACAAGGACCAGCTCATAGCAGAGGTGAAGAGAAAGTACACAGTTGGAA
ATGTGCTCTTGGACAAGCACACATTCAGTGTTGTGGTCTTCCCTAATGTGGACCAAGCTT
TTGTGGCAGCTCTTGTGATCATCATGGACCGTATCCATGAGGACTAGATGGCTTTGACAG
CCCCGCATGAGCAAGCCCGCCCTTCGTCTTCATCCTGTCCTGCCACCATCTACCTAAGGA
TGTCCCCTTGTTTTTGCATAAGCATTCCTTCACCGCCATATCCATCTTTCTGTTTGTGGT
TTCCATTGCAAGTAGCTTAGTTTGTAAGTTTGACCCCTAGTCAAGGTAACTGGTTTTTGC
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9LZX1
Definition sp|Q9LZX1|Y5175_ARATH UPF0706 protein At5g01750 OS=Arabidopsis thaliana
Align length 76
Score (bit) 68.9
E-value 7.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947868|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_H11, 5'
         (421 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LZX1|Y5175_ARATH UPF0706 protein At5g01750 OS=Arabidopsis t...    69   7e-12
sp|Q09165|DIG1_CAEEL Mesocentin OS=Caenorhabditis elegans GN=dig...    33   0.58 
sp|Q9BYQ2|KRA94_HUMAN Keratin-associated protein 9-4 OS=Homo sap...    33   0.60 
sp|Q9BYQ3|KRA93_HUMAN Keratin-associated protein 9-3 OS=Homo sap...    30   3.0  
sp|Q9BYQ4|KRA92_HUMAN Keratin-associated protein 9-2 OS=Homo sap...    30   3.0  
sp|A8MXZ3|KR923_HUMAN Putative keratin-associated protein 9-2-li...    30   3.0  
sp|P43218|GIPR_MESAU Gastric inhibitory polypeptide receptor OS=...    30   3.9  
sp|A1KQY9|K118A_POLSE Keratin, type I cytoskeletal 18-A OS=Polyp...    30   4.9  
sp|P04499|TERM_ADE05 DNA terminal protein OS=Human adenovirus C ...    30   5.0  
sp|P03269|TERM_ADE02 DNA terminal protein OS=Human adenovirus C ...    30   5.0  
sp|A5A6P5|KRA92_PANTR Keratin-associated protein 9-2 OS=Pan trog...    30   5.0  
sp|O88280|SLIT3_RAT Slit homolog 3 protein OS=Rattus norvegicus ...    29   6.6  
sp|A4G6P0|NHAA_HERAR Na(+)/H(+) antiporter nhaA OS=Herminiimonas...    29   6.6  
sp|A8MTY7|KR921_HUMAN Putative keratin-associated protein 9-2-li...    29   6.6  
sp|Q9ULT0|TTC7A_HUMAN Tetratricopeptide repeat protein 7A OS=Hom...    29   8.6  

>sp|Q9LZX1|Y5175_ARATH UPF0706 protein At5g01750 OS=Arabidopsis
           thaliana GN=At5g01750 PE=1 SV=1
          Length = 217

 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 31/76 (40%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
 Frame = +3

Query: 3   NENDDAPDFEVKGNFFQREAQIF--HKDQLIAEVKRKYTVGNVLLDKHTFSVVVFPNVDQ 176
           N+++   DF VKG++ +R   ++    D ++A++ RK+TV +V L K  FSV V+PNVD 
Sbjct: 138 NKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDY 197

Query: 177 AFVAALVIIMDRIHED 224
           AF+A+LV+I+D ++ +
Sbjct: 198 AFIASLVVILDDVNRE 213


>sp|Q09165|DIG1_CAEEL Mesocentin OS=Caenorhabditis elegans GN=dig-1 PE=1
             SV=2
          Length = 13100

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 120   NVLLDKHTFSVVVFPN--VDQAFVAALVIIMDRIHED*MALTAPHEQARPSSSSC 278
             N L   HT++V V  N  VD +   A+    D +H D    TAP +  +PS SSC
Sbjct: 12875 NELPSDHTYTVCVMTNERVDNSTALAIDKNCDSLHID-QNTTAPEDYVKPSPSSC 12928


>sp|Q9BYQ2|KRA94_HUMAN Keratin-associated protein 9-4 OS=Homo
           sapiens GN=KRTAP9-4 PE=2 SV=1
          Length = 154

 Score = 32.7 bits (73), Expect = 0.60
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 122 CALGQAHIQCCGLP*CGPSFCGSSCD 199
           C        CC  P C P+ CGSSCD
Sbjct: 66  CVTSCCQPSCCSTPCCQPTCCGSSCD 91


>sp|Q9BYQ3|KRA93_HUMAN Keratin-associated protein 9-3 OS=Homo
           sapiens GN=KRTAP9-3 PE=1 SV=1
          Length = 159

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 122 CALGQAHIQCCGLP*CGPSFCGSSC 196
           C        CC  P C P+ CGSSC
Sbjct: 66  CVTSCCQPSCCSTPCCQPTCCGSSC 90


>sp|Q9BYQ4|KRA92_HUMAN Keratin-associated protein 9-2 OS=Homo
           sapiens GN=KRTAP9-2 PE=1 SV=2
          Length = 174

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 122 CALGQAHIQCCGLP*CGPSFCGSSC 196
           C        CC  P C P+ CGSSC
Sbjct: 71  CVTSCCQPSCCSTPCCQPTCCGSSC 95


>sp|A8MXZ3|KR923_HUMAN Putative keratin-associated protein 9-2-like
           3 OS=Homo sapiens PE=3 SV=1
          Length = 250

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 122 CALGQAHIQCCGLP*CGPSFCGSSC 196
           C        CC  P C P+ CGSSC
Sbjct: 71  CVASCCQPSCCSTPCCQPTCCGSSC 95


>sp|P43218|GIPR_MESAU Gastric inhibitory polypeptide receptor
           OS=Mesocricetus auratus GN=GIPR PE=2 SV=1
          Length = 462

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 29  RSQGQLLPARGTDLPQGPAHSRGEEKVHSW 118
           RS  + +P  G+ LP GP H  GEE + S+
Sbjct: 432 RSAPREVPITGSTLPSGPLHGPGEEVLESY 461


>sp|A1KQY9|K118A_POLSE Keratin, type I cytoskeletal 18-A
           OS=Polypterus senegalus GN=krt18a PE=2 SV=1
          Length = 428

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = -3

Query: 200 DHKSCHKSLVHIREDHNTECVLVQEHISNCVLSLHLCYELVLVEDLCLALEEVALDFE 27
           D +S  + L+ I+  H T+   +++HIS C + + +  +    +DL   +EE+   +E
Sbjct: 201 DIESLKEELIFIKRSHQTDVEELRKHISECGVQVDV--DAPKGQDLSKIMEEIRAQYE 256


>sp|P04499|TERM_ADE05 DNA terminal protein OS=Human adenovirus C
           serotype 5 GN=PTP PE=1 SV=1
          Length = 653

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 20  SGFRSQGQLLPARGTDLPQGP 82
           S  R+Q QLLPARG D+P  P
Sbjct: 614 SNLRAQHQLLPARGADVPLPP 634


>sp|P03269|TERM_ADE02 DNA terminal protein OS=Human adenovirus C
           serotype 2 GN=PTP PE=1 SV=2
          Length = 653

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 20  SGFRSQGQLLPARGTDLPQGP 82
           S  R+Q QLLPARG D+P  P
Sbjct: 614 SNLRAQHQLLPARGADVPLPP 634
tr_hit_id A9NL98
Definition tr|A9NL98|A9NL98_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 72
Score (bit) 79.0
E-value 1.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947868|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_H11, 5'
         (421 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NL98|A9NL98_PICSI Putative uncharacterized protein OS=Picea...    79   1e-13
tr|A9NZT7|A9NZT7_PICSI Putative uncharacterized protein OS=Picea...    78   2e-13
tr|B6T7N7|B6T7N7_MAIZE Putative uncharacterized protein OS=Zea m...    75   2e-12
tr|B6SU53|B6SU53_MAIZE Putative uncharacterized protein OS=Zea m...    73   6e-12
tr|A9T2I3|A9T2I3_PHYPA Predicted protein OS=Physcomitrella paten...    70   7e-11
tr|A7QFJ2|A7QFJ2_VITVI Chromosome chr8 scaffold_88, whole genome...    70   7e-11
tr|A2YJM7|A2YJM7_ORYSI Putative uncharacterized protein OS=Oryza...    67   3e-10
tr|A7QFJ1|A7QFJ1_VITVI Chromosome chr8 scaffold_88, whole genome...    65   1e-09
tr|Q84YM9|Q84YM9_ORYSJ Os07g0230700 protein OS=Oryza sativa subs...    64   3e-09
tr|A3BI01|A3BI01_ORYSJ Putative uncharacterized protein OS=Oryza...    64   3e-09
tr|A9S6M4|A9S6M4_PHYPA Predicted protein OS=Physcomitrella paten...    64   4e-09
tr|Q9SF24|Q9SF24_ARATH F26K24.3 protein OS=Arabidopsis thaliana ...    61   2e-08
tr|A9T0M4|A9T0M4_PHYPA Predicted protein OS=Physcomitrella paten...    61   3e-08
tr|B6TXU6|B6TXU6_MAIZE Putative uncharacterized protein OS=Zea m...    58   2e-07
tr|Q10BI2|Q10BI2_ORYSJ Os03g0816800 protein OS=Oryza sativa subs...    55   2e-06
tr|A9SW48|A9SW48_PHYPA Predicted protein (Fragment) OS=Physcomit...    53   9e-06
tr|A9NZ78|A9NZ78_PICSI Putative uncharacterized protein OS=Picea...    51   3e-05
tr|A9T2I4|A9T2I4_PHYPA Predicted protein OS=Physcomitrella paten...    50   4e-05
tr|B8AMA3|B8AMA3_ORYSI Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|A7Q9T4|A7Q9T4_VITVI Chromosome chr8 scaffold_68, whole genome...    46   0.001
tr|A5BRT0|A5BRT0_VITVI Putative uncharacterized protein OS=Vitis...    46   0.001
tr|B8LPH7|B8LPH7_PICSI Putative uncharacterized protein OS=Picea...    45   0.002
tr|Q84TW5|Q84TW5_ORYSJ Putative uncharacterized protein OSJNBa00...    45   0.002
tr|Q3E992|Q3E992_ARATH Uncharacterized protein At5g20640.1 (Puta...    45   0.002
tr|A0MFH4|A0MFH4_ARATH Putative uncharacterized protein (Fragmen...    45   0.002
tr|Q9LQ36|Q9LQ36_ARATH F14M2.3 protein OS=Arabidopsis thaliana G...    44   0.003
tr|Q10BI3|Q10BI3_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    44   0.003
tr|Q0DMC9|Q0DMC9_ORYSJ Os03g0816700 protein (Fragment) OS=Oryza ...    44   0.003
tr|A7NY47|A7NY47_VITVI Chromosome chr6 scaffold_3, whole genome ...    44   0.003
tr|A5AJ46|A5AJ46_VITVI Putative uncharacterized protein (Chromos...    44   0.003

>tr|A9NL98|A9NL98_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 222

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 35/72 (48%), Positives = 53/72 (73%)
 Frame = +3

Query: 9   NDDAPDFEVKGNFFQREAQIFHKDQLIAEVKRKYTVGNVLLDKHTFSVVVFPNVDQAFVA 188
           N+   DF+VKG+FF+R   I+    +IAE++RKYTV  VL+ + TF+V V+P VD AF+ 
Sbjct: 141 NNSHSDFKVKGSFFERSCTIYQGRTVIAEMRRKYTVSQVLMGRDTFTVTVYPGVDYAFIV 200

Query: 189 ALVIIMDRIHED 224
           ALV+I+D I+++
Sbjct: 201 ALVVILDEINKE 212


>tr|A9NZT7|A9NZT7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 222

 Score = 77.8 bits (190), Expect = 2e-13
 Identities = 35/72 (48%), Positives = 53/72 (73%)
 Frame = +3

Query: 9   NDDAPDFEVKGNFFQREAQIFHKDQLIAEVKRKYTVGNVLLDKHTFSVVVFPNVDQAFVA 188
           N+   DF+VKG+FF+R   I+    +IAE++RKYTV  VL+ + TF+V V+P VD AF+ 
Sbjct: 141 NNCHSDFKVKGSFFERSCTIYQGRTVIAEMRRKYTVSQVLMGRDTFTVTVYPGVDYAFIV 200

Query: 189 ALVIIMDRIHED 224
           ALV+I+D I+++
Sbjct: 201 ALVVILDEINKE 212


>tr|B6T7N7|B6T7N7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 210

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 35/76 (46%), Positives = 52/76 (68%), Gaps = 2/76 (2%)
 Frame = +3

Query: 3   NENDDAPDFEVKGNFFQREAQIF--HKDQLIAEVKRKYTVGNVLLDKHTFSVVVFPNVDQ 176
           N    A DF++KG++F+R    +  +   +IA++ R++TV NVLL + TF V VFP+VD 
Sbjct: 132 NTAQQACDFKIKGSYFERSCAFYLGNSSSMIAQMNRQFTVTNVLLGRDTFGVTVFPHVDY 191

Query: 177 AFVAALVIIMDRIHED 224
            FVAALV+I+D IH +
Sbjct: 192 VFVAALVVILDEIHRE 207


>tr|B6SU53|B6SU53_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 207

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 33/69 (47%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
 Frame = +3

Query: 24  DFEVKGNFFQREAQIF--HKDQLIAEVKRKYTVGNVLLDKHTFSVVVFPNVDQAFVAALV 197
           DF++KG++F+R    +  +   +IA++ R++TV NVLL + TF V VFP+VD  FVAALV
Sbjct: 136 DFKIKGSYFERSCAFYLGNSSSMIAQMNRQFTVTNVLLGRDTFGVTVFPHVDYVFVAALV 195

Query: 198 IIMDRIHED 224
           +I+D IH +
Sbjct: 196 VILDEIHRE 204


>tr|A9T2I3|A9T2I3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_167699 PE=4 SV=1
          Length = 252

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 32/65 (49%), Positives = 43/65 (66%)
 Frame = +3

Query: 21  PDFEVKGNFFQREAQIFHKDQLIAEVKRKYTVGNVLLDKHTFSVVVFPNVDQAFVAALVI 200
           PD++VKG+FF R   +F   +  A V R+ T   V+LDK TF V +FP VDQA V AL++
Sbjct: 178 PDYQVKGDFFDRNLTVFRGAEQAALVTRQITFTTVILDKDTFGVTIFPGVDQALVLALIV 237

Query: 201 IMDRI 215
           IMD +
Sbjct: 238 IMDEV 242


>tr|A7QFJ2|A7QFJ2_VITVI Chromosome chr8 scaffold_88, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037442001
           PE=4 SV=1
          Length = 216

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 30/76 (39%), Positives = 55/76 (72%), Gaps = 2/76 (2%)
 Frame = +3

Query: 3   NENDDAPDFEVKGNFFQREAQIF--HKDQLIAEVKRKYTVGNVLLDKHTFSVVVFPNVDQ 176
           N  ++  DF++KG++F R   ++  + + +IA++ +K+ V +V+L K TF+V V+PNVD 
Sbjct: 138 NTKEEICDFKLKGSWFDRSCTVYAGNSNTIIAQMHKKHNVQSVVLGKDTFAVTVYPNVDY 197

Query: 177 AFVAALVIIMDRIHED 224
           AF+ AL++I+D I++D
Sbjct: 198 AFIVALIVILDEINDD 213


>tr|A2YJM7|A2YJM7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25434 PE=4 SV=1
          Length = 201

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
 Frame = +3

Query: 3   NENDDAPDFEVKGNFFQREAQIF--HKDQLIAEVKRKYTVGNVLLDKHTFSVVVFPNVDQ 176
           N  +   DF++KG++F R +  +    + +IA++ RK+T  +V+L +  FS+ VFP VD 
Sbjct: 123 NTAEQVCDFKIKGSYFDRSSAFYLGKSNTIIAQMNRKHTAASVVLGRDVFSITVFPQVDY 182

Query: 177 AFVAALVIIMDRIHED 224
            F+AALV I+D +H D
Sbjct: 183 VFIAALVAILDDVHRD 198


>tr|A7QFJ1|A7QFJ1_VITVI Chromosome chr8 scaffold_88, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037441001
           PE=4 SV=1
          Length = 213

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 28/76 (36%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
 Frame = +3

Query: 3   NENDDAPDFEVKGNFFQREAQIF--HKDQLIAEVKRKYTVGNVLLDKHTFSVVVFPNVDQ 176
           N  ++  DF+++G++F R   ++  + + +IA++ +KY V +V+L K TF+V V+ NVD 
Sbjct: 138 NTKEEVCDFKLRGSWFDRSCTVYAGNSNTIIAKMHKKYNVQSVVLGKDTFAVTVYTNVDY 197

Query: 177 AFVAALVIIMDRIHED 224
           AF+ AL++I++ I++D
Sbjct: 198 AFIVALIVILEEINKD 213


>tr|Q84YM9|Q84YM9_ORYSJ Os07g0230700 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0086N05.106 PE=2 SV=1
          Length = 214

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
 Frame = +3

Query: 3   NENDDAPDFEVKGNFFQREAQIF--HKDQLIAEVKRKYTVGNVLLDKHTFSVVVFPNVDQ 176
           N  +   DF++KG++  R +  +    + +IA++ RK+T  +V+L +  FS+ VFP VD 
Sbjct: 136 NTAEQVCDFKIKGSYCDRSSAFYLGKSNTIIAQMNRKHTAASVVLGRDVFSITVFPQVDY 195

Query: 177 AFVAALVIIMDRIHED 224
            F+AALV I+D +H D
Sbjct: 196 VFIAALVAILDDVHRD 211


>tr|A3BI01|A3BI01_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_022673 PE=4 SV=1
          Length = 201

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
 Frame = +3

Query: 3   NENDDAPDFEVKGNFFQREAQIF--HKDQLIAEVKRKYTVGNVLLDKHTFSVVVFPNVDQ 176
           N  +   DF++KG++  R +  +    + +IA++ RK+T  +V+L +  FS+ VFP VD 
Sbjct: 123 NTAEQVCDFKIKGSYCDRSSAFYLGKSNTIIAQMNRKHTAASVVLGRDVFSITVFPQVDY 182

Query: 177 AFVAALVIIMDRIHED 224
            F+AALV I+D +H D
Sbjct: 183 VFIAALVAILDDVHRD 198