DK947874 |
Clone id |
YMU02A02NGRM0001_A06 |
Library |
YMU02 |
Length |
591 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A02NGRM0001_A06. 5' end sequence. |
Accession |
DK947874 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL1251Contig1 |
Sequence |
AGGGTTCGTTACTGCACCTGCAAGTGGTCGTCATGGCTCCCAAGAAGGATAAGGCCTCCT CTGCCCCCTCGAAACCTGCCAAGAGTAGTGGAGGCGGCAAGCAGAAGAAGAAGAAATGGA GCAAAGGAAAGCAAAAGGAGAAAGTGAACAACATGGTCTTGTTTGATCAAGCAACATATG ATAAGCTACTGTCAGAGGTGCCGAAGTACAAGCTCATTACACCTTCTATCATCTCGGATC GACTAAGAATAAATGGATCACTTGCTCGGAAGGCTATTAGGGAGTTAACTGATCGTGGCA CAATCAGGCTGGTGGCAGCTCATGCAAACCAGCAAATCTATACTCGGGCTACTAACACCT AGTTTTTCTAATTGGGGCTATTAACGCTTCTATGTGAGTTTCTAGCACTCTTTGAAATCC TTACGATGTTCGTTTGGGAGCTTGGCCAGTCTCCCGCTTTTGTGCACCAGAGTGTTTAGT GGACTGGCCTCTTTTAAGTCCTTGTTTTGATGAATATACTACTTTGTTTCTGACAGAGAT TTATCTGCACTTTGGGTGTACGAATCTTGCAGAAATTGTGTGCTAGCTAGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P46301 |
Definition |
sp|P46301|RS25_SOLLC 40S ribosomal protein S25 OS=Solanum lycopersicum |
Align length |
72 |
Score (bit) |
122.0 |
E-value |
2.0e-27 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RYT1 |
Definition |
tr|A9RYT1|A9RYT1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
72 |
Score (bit) |
128.0 |
E-value |
3.0e-28 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947874|Adiantum capillus-veneris mRNA, clone: YMU02A02NGRM0001_A06, 5' (591 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RYT1|A9RYT1_PHYPA Predicted protein OS=Physcomitrella paten... 128 3e-28 tr|A9RSW5|A9RSW5_PHYPA Predicted protein OS=Physcomitrella paten... 128 3e-28 tr|A9S9T4|A9S9T4_PHYPA Predicted protein (Fragment) OS=Physcomit... 126 8e-28 tr|A9RPL4|A9RPL4_PHYPA Predicted protein OS=Physcomitrella paten... 126 8e-28 tr|Q6VEV1|Q6VEV1_SOYBN 40S ribosomal protein S25 (Fragment) OS=G... 126 1e-27 tr|A9NKH7|A9NKH7_PICSI Putative uncharacterized protein OS=Picea... 124 4e-27 tr|A9PDP8|A9PDP8_POPTR Putative uncharacterized protein OS=Popul... 124 5e-27 tr|B0BLI2|B0BLI2_LOTJA CM0216.350.nc protein (Fragment) OS=Lotus... 123 7e-27 tr|B0FSK2|B0FSK2_9MAGN Ribosomal protein S25 OS=Adonis aestivali... 123 9e-27 tr|A7QUW2|A7QUW2_VITVI Chromosome chr13 scaffold_181, whole geno... 122 1e-26 tr|A9PAD1|A9PAD1_POPTR Putative uncharacterized protein OS=Popul... 122 2e-26 tr|B3H4B6|B3H4B6_ARATH Uncharacterized protein At4g39200.2 OS=Ar... 122 2e-26 tr|B7FGM7|B7FGM7_MEDTR Putative uncharacterized protein OS=Medic... 121 3e-26 tr|A9NT78|A9NT78_PICSI Putative uncharacterized protein OS=Picea... 121 3e-26 tr|B7FH10|B7FH10_MEDTR Putative uncharacterized protein OS=Medic... 120 6e-26 tr|B6SMC3|B6SMC3_MAIZE 40S ribosomal protein S25-1 OS=Zea mays P... 119 1e-25 tr|A7QL29|A7QL29_VITVI Chromosome undetermined scaffold_116, who... 119 1e-25 tr|Q2V471|Q2V471_ARATH Uncharacterized protein At2g21580.2 OS=Ar... 119 2e-25 tr|A5BRH6|A5BRH6_VITVI Putative uncharacterized protein OS=Vitis... 119 2e-25 tr|Q652P8|Q652P8_ORYSJ Os09g0568800 protein OS=Oryza sativa subs... 117 4e-25 tr|A2Z480|A2Z480_ORYSI Putative uncharacterized protein OS=Oryza... 117 4e-25 tr|B4FSL2|B4FSL2_MAIZE Putative uncharacterized protein OS=Zea m... 117 5e-25 tr|B6SX33|B6SX33_MAIZE 40S ribosomal protein S25-1 OS=Zea mays P... 116 8e-25 tr|Q6YZI2|Q6YZI2_ORYSJ Os08g0559200 protein OS=Oryza sativa subs... 115 1e-24 tr|A3BVR1|A3BVR1_ORYSJ Putative uncharacterized protein OS=Oryza... 115 1e-24 tr|B4FXK8|B4FXK8_MAIZE 40S ribosomal protein S25-1 OS=Zea mays P... 115 2e-24 tr|B4FG22|B4FG22_MAIZE 40S ribosomal protein S25-1 OS=Zea mays P... 115 2e-24 tr|A7P8X9|A7P8X9_VITVI Chromosome chr3 scaffold_8, whole genome ... 112 1e-23 tr|Q53QG2|Q53QG2_ORYSJ cDNA clone:001-018-C09, full insert seque... 110 6e-23 tr|Q0IUI8|Q0IUI8_ORYSJ Os11g0153800 protein (Fragment) OS=Oryza ... 110 6e-23
>tr|A9RYT1|A9RYT1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_56445 PE=4 SV=1 Length = 108
Score = 128 bits (321), Expect = 3e-28 Identities = 63/72 (87%), Positives = 69/72 (95%) Frame = +3
Query: 144 VNNMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIRLVAAH 323 VNNMVLFDQATYDKLLSEVPK+KL+TPS++SDRLRI GSLARKAI+EL +GTIRLVAAH Sbjct: 37 VNNMVLFDQATYDKLLSEVPKFKLVTPSVLSDRLRITGSLARKAIKELMAKGTIRLVAAH 96
Query: 324 ANQQIYTRATNT 359 ANQQIYTRATNT Sbjct: 97 ANQQIYTRATNT 108
>tr|A9RSW5|A9RSW5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_118815 PE=4 SV=1 Length = 108
Score = 128 bits (321), Expect = 3e-28 Identities = 63/72 (87%), Positives = 69/72 (95%) Frame = +3
Query: 144 VNNMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIRLVAAH 323 VNNMVLFDQATYDKLLSEVPK+KL+TPS++SDRLRI GSLARKAI+EL +GTIRLVAAH Sbjct: 37 VNNMVLFDQATYDKLLSEVPKFKLVTPSVLSDRLRITGSLARKAIKELMAKGTIRLVAAH 96
Query: 324 ANQQIYTRATNT 359 ANQQIYTRATNT Sbjct: 97 ANQQIYTRATNT 108
>tr|A9S9T4|A9S9T4_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_126254 PE=4 SV=1 Length = 83
Score = 126 bits (317), Expect = 8e-28 Identities = 62/72 (86%), Positives = 68/72 (94%) Frame = +3
Query: 144 VNNMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIRLVAAH 323 VNNMVLFDQ TYDKLLSEVPK+KL+TPS++SDRLRI GSLARKAI+EL +GTIRLVAAH Sbjct: 12 VNNMVLFDQGTYDKLLSEVPKFKLVTPSVLSDRLRITGSLARKAIKELMAKGTIRLVAAH 71
Query: 324 ANQQIYTRATNT 359 ANQQIYTRATNT Sbjct: 72 ANQQIYTRATNT 83
>tr|A9RPL4|A9RPL4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_177001 PE=4 SV=1 Length = 108
Score = 126 bits (317), Expect = 8e-28 Identities = 62/72 (86%), Positives = 68/72 (94%) Frame = +3
Query: 144 VNNMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIRLVAAH 323 VNNMVLFDQ TYDKLLSEVPK+KL+TPS++SDRLRI GSLARKAI+EL +GTIRLVAAH Sbjct: 37 VNNMVLFDQGTYDKLLSEVPKFKLVTPSVLSDRLRITGSLARKAIKELMAKGTIRLVAAH 96
Query: 324 ANQQIYTRATNT 359 ANQQIYTRATNT Sbjct: 97 ANQQIYTRATNT 108
>tr|Q6VEV1|Q6VEV1_SOYBN 40S ribosomal protein S25 (Fragment) OS=Glycine max PE=2 SV=1 Length = 94
Score = 126 bits (316), Expect = 1e-27 Identities = 63/72 (87%), Positives = 68/72 (94%) Frame = +3
Query: 144 VNNMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIRLVAAH 323 VNN VLFDQATYDKLLSE PKYKLITPSI+SDRLRINGSLARKAIREL RG+IR+V+AH Sbjct: 23 VNNQVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGSIRMVSAH 82
Query: 324 ANQQIYTRATNT 359 A+QQIYTRATNT Sbjct: 83 ASQQIYTRATNT 94
>tr|A9NKH7|A9NKH7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 108
Score = 124 bits (311), Expect = 4e-27 Identities = 60/72 (83%), Positives = 69/72 (95%) Frame = +3
Query: 144 VNNMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIRLVAAH 323 VNNMVLFDQATYDKLLSE PKYKLITPSI+SDRLRINGSLARKAI++L RG+IR+++AH Sbjct: 37 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 96
Query: 324 ANQQIYTRATNT 359 ++QQIYTRATNT Sbjct: 97 SSQQIYTRATNT 108
>tr|A9PDP8|A9PDP8_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 108
Score = 124 bits (310), Expect = 5e-27 Identities = 60/72 (83%), Positives = 69/72 (95%) Frame = +3
Query: 144 VNNMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIRLVAAH 323 VNNMVLFDQATYDKLLSE PKYKLITPS++SDR+RI+GSLARKAIREL RG+IR+V++H Sbjct: 37 VNNMVLFDQATYDKLLSEAPKYKLITPSVLSDRMRISGSLARKAIRELMARGSIRMVSSH 96
Query: 324 ANQQIYTRATNT 359 A+QQIYTRATNT Sbjct: 97 ASQQIYTRATNT 108
>tr|B0BLI2|B0BLI2_LOTJA CM0216.350.nc protein (Fragment) OS=Lotus japonicus GN=CM0216.350.nc PE=4 SV=1 Length = 108
Score = 123 bits (309), Expect = 7e-27 Identities = 60/72 (83%), Positives = 68/72 (94%) Frame = +3
Query: 144 VNNMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIRLVAAH 323 VNNMVLFDQ TYDKLLSE PK+KLITPSI+SDRLR+NGSLAR+AIREL RG+IR+V+AH Sbjct: 37 VNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRVNGSLARRAIRELMARGSIRMVSAH 96
Query: 324 ANQQIYTRATNT 359 A+QQIYTRATNT Sbjct: 97 ASQQIYTRATNT 108
>tr|B0FSK2|B0FSK2_9MAGN Ribosomal protein S25 OS=Adonis aestivalis var. palaestina PE=4 SV=1 Length = 109
Score = 123 bits (308), Expect = 9e-27 Identities = 58/72 (80%), Positives = 69/72 (95%) Frame = +3
Query: 144 VNNMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIRLVAAH 323 VNNMVLFDQA+YDKLLSE PKYKLITPSI+SDRLR+NGSLAR+AI++LT +G IR+++AH Sbjct: 38 VNNMVLFDQASYDKLLSEAPKYKLITPSILSDRLRVNGSLARRAIKDLTAKGAIRMISAH 97
Query: 324 ANQQIYTRATNT 359 A+QQIYTRATNT Sbjct: 98 ASQQIYTRATNT 109
>tr|A7QUW2|A7QUW2_VITVI Chromosome chr13 scaffold_181, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00007016001 PE=4 SV=1 Length = 110
Score = 122 bits (307), Expect = 1e-26 Identities = 60/71 (84%), Positives = 68/71 (95%) Frame = +3
Query: 144 VNNMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIRLVAAH 323 VNNMVLFDQ TYDKLLSEVPKYKLITPSI+SDRLRINGSLAR+AI++L RG+IR+V+AH Sbjct: 39 VNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRMVSAH 98
Query: 324 ANQQIYTRATN 356 A+QQIYTRATN Sbjct: 99 ASQQIYTRATN 109
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