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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947880
Clone id YMU02A02NGRM0001_B01
Library
Length 151
Definition Adiantum capillus-veneris mRNA. clone: YMU02A02NGRM0001_B01. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCTTTGCTCATTTACAAGGACTCGATTTTATGTCCAAAAATCACATGCTAGCAGATGTGG
TCACCATCATCGGTACTCAAGATATTGTGTTTGGAGAGGTAGATAGATAATACAATACAC
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P93306
Definition sp|P93306|NDUS2_ARATH NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Arabidopsis thaliana
Align length 35
Score (bit) 71.6
E-value 1.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947880|Adiantum capillus-veneris mRNA, clone:
YMU02A02NGRM0001_B01, 5'
         (122 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P93306|NDUS2_ARATH NADH-ubiquinone oxidoreductase 49 kDa subu...    72   1e-12
sp|Q37619|NDUS2_PROWI NADH-ubiquinone oxidoreductase 49 kDa subu...    71   1e-12
sp|Q9TC96|NDUS2_NEPOL NADH-ubiquinone oxidoreductase 49 kDa subu...    69   6e-12
sp|O21270|NDUS2_RECAM NADH-ubiquinone oxidoreductase 49 kDa subu...    67   2e-11
sp|Q37720|NDUS2_PYLLI NADH-ubiquinone oxidoreductase 49 kDa subu...    64   2e-10
sp|A1KRS5|NUOD_NEIMF NADH-quinone oxidoreductase subunit D OS=Ne...    64   2e-10
sp|Q9K1C0|NUOD_NEIMB NADH-quinone oxidoreductase subunit D OS=Ne...    64   2e-10
sp|A1INN7|NUOD_NEIMA NADH-quinone oxidoreductase subunit D OS=Ne...    64   2e-10
sp|A9M3D9|NUOD_NEIM0 NADH-quinone oxidoreductase subunit D OS=Ne...    64   2e-10
sp|B4RPI1|NUOD_NEIG2 NADH-quinone oxidoreductase subunit D OS=Ne...    64   2e-10
sp|Q5F618|NUOD_NEIG1 NADH-quinone oxidoreductase subunit D OS=Ne...    64   2e-10
sp|A8F1C5|NUOD_RICM5 NADH-quinone oxidoreductase subunit D OS=Ri...    64   3e-10
sp|Q92ID8|NUOD_RICCN NADH-quinone oxidoreductase subunit D OS=Ri...    64   3e-10
sp|Q1RJI9|NUOD_RICBR NADH-quinone oxidoreductase subunit D OS=Ri...    64   3e-10
sp|A8GX80|NUOD_RICB8 NADH-quinone oxidoreductase subunit D OS=Ri...    64   3e-10
sp|A8GN50|NUOD_RICAH NADH-quinone oxidoreductase subunit D OS=Ri...    64   3e-10
sp|Q0MQG5|NDUS2_PANTR NADH dehydrogenase [ubiquinone] iron-sulfu...    64   3e-10
sp|O75306|NDUS2_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfu...    64   3e-10
sp|Q0MQG4|NDUS2_GORGO NADH dehydrogenase [ubiquinone] iron-sulfu...    64   3e-10
sp|Q23883|NDUS2_DICDI NADH-ubiquinone oxidoreductase 49 kDa subu...    64   3e-10
sp|Q2LCR5|NDUS2_DICCI NADH-ubiquinone oxidoreductase 49 kDa subu...    64   3e-10
sp|P17694|NDUS2_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfu...    64   3e-10
sp|Q641Y2|NDUS2_RAT NADH dehydrogenase [ubiquinone] iron-sulfur ...    63   4e-10
sp|Q91WD5|NDUS2_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfu...    63   4e-10
sp|A8GRR5|NUOD_RICRS NADH-quinone oxidoreductase subunit D OS=Ri...    62   9e-10
sp|B0BX71|NUOD_RICRO NADH-quinone oxidoreductase subunit D OS=Ri...    62   9e-10
sp|Q4UM08|NUOD_RICFE NADH-quinone oxidoreductase subunit D OS=Ri...    62   9e-10
sp|Q9ZDH4|NUOD_RICPR NADH-quinone oxidoreductase subunit D OS=Ri...    62   1e-09
sp|A8EZ86|NUOD_RICCK NADH-quinone oxidoreductase subunit D OS=Ri...    62   1e-09
sp|Q2KV09|NUOD_BORA1 NADH-quinone oxidoreductase subunit D OS=Bo...    62   1e-09

>sp|P93306|NDUS2_ARATH NADH-ubiquinone oxidoreductase 49 kDa subunit
           OS=Arabidopsis thaliana GN=NAD7 PE=1 SV=2
          Length = 394

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 34/35 (97%), Positives = 35/35 (100%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           FAHLQGLDFMSK+HMLADVVTIIGTQDIVFGEVDR
Sbjct: 360 FAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 394


>sp|Q37619|NDUS2_PROWI NADH-ubiquinone oxidoreductase 49 kDa subunit
           OS=Prototheca wickerhamii GN=NAD7 PE=3 SV=1
          Length = 400

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 33/35 (94%), Positives = 35/35 (100%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           FAHLQGLDFM++NHMLADVVTIIGTQDIVFGEVDR
Sbjct: 366 FAHLQGLDFMARNHMLADVVTIIGTQDIVFGEVDR 400


>sp|Q9TC96|NDUS2_NEPOL NADH-ubiquinone oxidoreductase 49 kDa subunit
           OS=Nephroselmis olivacea GN=NAD7 PE=3 SV=1
          Length = 398

 Score = 69.3 bits (168), Expect = 6e-12
 Identities = 33/35 (94%), Positives = 33/35 (94%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           F HLQGLD MSKNHMLADVVTIIGTQDIVFGEVDR
Sbjct: 364 FLHLQGLDMMSKNHMLADVVTIIGTQDIVFGEVDR 398


>sp|O21270|NDUS2_RECAM NADH-ubiquinone oxidoreductase 49 kDa subunit
           OS=Reclinomonas americana GN=NAD7 PE=3 SV=1
          Length = 396

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 31/35 (88%), Positives = 34/35 (97%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           F+HLQGL+FMSK HM+ADVVTIIGTQDIVFGEVDR
Sbjct: 362 FSHLQGLNFMSKGHMIADVVTIIGTQDIVFGEVDR 396


>sp|Q37720|NDUS2_PYLLI NADH-ubiquinone oxidoreductase 49 kDa subunit
           OS=Pylaiella littoralis GN=NAD7 PE=3 SV=1
          Length = 398

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 30/35 (85%), Positives = 34/35 (97%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           F+HLQGL+FM+ +HMLADVVTIIGTQDIVFGEVDR
Sbjct: 364 FSHLQGLNFMACSHMLADVVTIIGTQDIVFGEVDR 398


>sp|A1KRS5|NUOD_NEIMF NADH-quinone oxidoreductase subunit D
           OS=Neisseria meningitidis serogroup C / serotype 2a
           (strain ATCC 700532 / FAM18) GN=nuoD PE=3 SV=1
          Length = 418

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 30/35 (85%), Positives = 32/35 (91%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           FAHLQG+D M+K HMLADVV IIGTQDIVFGEVDR
Sbjct: 384 FAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418


>sp|Q9K1C0|NUOD_NEIMB NADH-quinone oxidoreductase subunit D
           OS=Neisseria meningitidis serogroup B GN=nuoD PE=3 SV=1
          Length = 418

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 30/35 (85%), Positives = 32/35 (91%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           FAHLQG+D M+K HMLADVV IIGTQDIVFGEVDR
Sbjct: 384 FAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418


>sp|A1INN7|NUOD_NEIMA NADH-quinone oxidoreductase subunit D
           OS=Neisseria meningitidis serogroup A GN=nuoD PE=3 SV=1
          Length = 418

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 30/35 (85%), Positives = 32/35 (91%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           FAHLQG+D M+K HMLADVV IIGTQDIVFGEVDR
Sbjct: 384 FAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418


>sp|A9M3D9|NUOD_NEIM0 NADH-quinone oxidoreductase subunit D
           OS=Neisseria meningitidis serogroup C (strain 053442)
           GN=nuoD PE=3 SV=1
          Length = 418

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 30/35 (85%), Positives = 32/35 (91%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           FAHLQG+D M+K HMLADVV IIGTQDIVFGEVDR
Sbjct: 384 FAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418


>sp|B4RPI1|NUOD_NEIG2 NADH-quinone oxidoreductase subunit D
           OS=Neisseria gonorrhoeae (strain NCCP11945) GN=nuoD PE=3
           SV=1
          Length = 418

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 30/35 (85%), Positives = 32/35 (91%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           FAHLQG+D M+K HMLADVV IIGTQDIVFGEVDR
Sbjct: 384 FAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
tr_hit_id Q9MF86
Definition tr|Q9MF86|Q9MF86_BETVU NADH dehydrogenase subunit 7 OS=Beta vulgaris subsp. vulgaris
Align length 35
Score (bit) 71.6
E-value 2.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947880|Adiantum capillus-veneris mRNA, clone:
YMU02A02NGRM0001_B01, 5'
         (122 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9MF86|Q9MF86_BETVU NADH dehydrogenase subunit 7 OS=Beta vulg...    72   2e-11
tr|Q9G6N7|Q9G6N7_PHYPA NADH dehydrogenase (NADH dehydrogenase su...    72   2e-11
tr|Q7YAM3|Q7YAM3_CHAVU NADH dehydrogenase subunit 7 OS=Chara vul...    72   2e-11
tr|Q6YSJ7|Q6YSJ7_BRANA NADH dehydrogenase subunit 7 OS=Brassica ...    72   2e-11
tr|Q5CAQ9|Q5CAQ9_NICSY NADH-Ubiquinone oxidoreductase subunit 7 ...    72   2e-11
tr|B5TM95|B5TM95_ARATH NADH dehydrogenase subunit 7 OS=Arabidops...    72   2e-11
tr|A6YEB2|A6YEB2_CHLAT NADH dehydrogenase subunit 7 OS=Chlorokyb...    71   3e-11
tr|Q9G4E4|Q9G4E4_9STRA NADH dehydrogenase subunit 7 OS=Thraustoc...    68   2e-10
tr|Q8M1F6|Q8M1F6_CHAGL NADH dehydrogenase subunit 7 OS=Chaetosph...    68   3e-10
tr|Q8W9T0|Q8W9T0_MESVI NADH dehydrogenase subunit 7 OS=Mesostigm...    67   3e-10
tr|Q2TUH7|Q2TUH7_FUCVE NADH dehydrogenase subunit 7 OS=Fucus ves...    67   3e-10
tr|B2XX86|B2XX86_9MYCE NADH dehydrogenase subunit 7 OS=Dictyoste...    67   3e-10
tr|Q6E780|Q6E780_SAPFE NADH dehydrogenase subunit 7 OS=Saprolegn...    67   6e-10
tr|Q2TUD5|Q2TUD5_9PHAE NADH dehydrogenase subunit 7 OS=Desmarest...    67   6e-10
tr|Q0P3H6|Q0P3H6_OSTTA Mitochondrion, complete genome OS=Ostreoc...    67   6e-10
tr|A6GS78|A6GS78_9BURK NADH dehydrogenase subunit D OS=Limnobact...    66   8e-10
tr|Q3S278|Q3S278_THAPS NADH dehydrogenase subunit 7 OS=Thalassio...    65   2e-09
tr|Q7HNY2|Q7HNY2_PYLLI NADH dehydrogenase subunit 7 OS=Pylaiella...    64   3e-09
tr|A8DWI3|A8DWI3_NEMVE Predicted protein (Fragment) OS=Nematoste...    64   3e-09
tr|Q7PBK1|Q7PBK1_RICSI NADH dehydrogenase I chain D OS=Rickettsi...    64   5e-09
tr|Q8HCQ3|Q8HCQ3_ORYSJ NADH dehydrogenase subunit 7 OS=Oryza sat...    64   5e-09
tr|Q6R9G1|Q6R9G1_MAIZE NADH dehydrogenase subunit 7 OS=Zea mays ...    64   5e-09
tr|Q36813|Q36813_WHEAT Nad7 OS=Triticum aestivum GN=nad7 PE=3 SV=1     64   5e-09
tr|Q2F990|Q2F990_ORYSI NADH dehydrogenase subunit 7 OS=Oryza sat...    64   5e-09
tr|Q1KKD3|Q1KKD3_MAIZE NADH dehydrogenase subunit 7 OS=Zea mays ...    64   5e-09
tr|Q1KK82|Q1KK82_MAIZE NADH dehydrogenase subunit 7 OS=Zea mays ...    64   5e-09
tr|Q0GRA0|Q0GRA0_ZEALU NADH dehydrogenase subunit 7 OS=Zea luxur...    64   5e-09
tr|Q0GR72|Q0GR72_ZEAPE NADH dehydrogenase subunit 7 OS=Zea peren...    64   5e-09
tr|Q0GR52|Q0GR52_ZEAMP NADH dehydrogenase subunit 7 OS=Zea mays ...    64   5e-09
tr|Q09EN7|Q09EN7_TRIDA NADH dehydrogenase subunit 7 OS=Tripsacum...    64   5e-09

>tr|Q9MF86|Q9MF86_BETVU NADH dehydrogenase subunit 7 OS=Beta
           vulgaris subsp. vulgaris GN=nad7 PE=2 SV=2
          Length = 391

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 34/35 (97%), Positives = 35/35 (100%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           FAHLQGLDFMSK+HMLADVVTIIGTQDIVFGEVDR
Sbjct: 357 FAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 391


>tr|Q9G6N7|Q9G6N7_PHYPA NADH dehydrogenase (NADH dehydrogenase
           subunit 7) OS=Physcomitrella patens GN=nad7 PE=3 SV=1
          Length = 393

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 34/35 (97%), Positives = 35/35 (100%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           FAHLQGLDFMSK+HMLADVVTIIGTQDIVFGEVDR
Sbjct: 359 FAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 393


>tr|Q7YAM3|Q7YAM3_CHAVU NADH dehydrogenase subunit 7 OS=Chara
           vulgaris GN=nad7 PE=3 SV=1
          Length = 393

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 34/35 (97%), Positives = 35/35 (100%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           FAHLQGLDFMSK+HMLADVVTIIGTQDIVFGEVDR
Sbjct: 359 FAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 393


>tr|Q6YSJ7|Q6YSJ7_BRANA NADH dehydrogenase subunit 7 OS=Brassica
           napus GN=nad7 PE=3 SV=1
          Length = 394

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 34/35 (97%), Positives = 35/35 (100%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           FAHLQGLDFMSK+HMLADVVTIIGTQDIVFGEVDR
Sbjct: 360 FAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 394


>tr|Q5CAQ9|Q5CAQ9_NICSY NADH-Ubiquinone oxidoreductase subunit 7
           OS=Nicotiana sylvestris GN=nad7 PE=3 SV=1
          Length = 394

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 34/35 (97%), Positives = 35/35 (100%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           FAHLQGLDFMSK+HMLADVVTIIGTQDIVFGEVDR
Sbjct: 360 FAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 394


>tr|B5TM95|B5TM95_ARATH NADH dehydrogenase subunit 7 OS=Arabidopsis
           thaliana PE=2 SV=1
          Length = 394

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 34/35 (97%), Positives = 35/35 (100%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           FAHLQGLDFMSK+HMLADVVTIIGTQDIVFGEVDR
Sbjct: 360 FAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 394


>tr|A6YEB2|A6YEB2_CHLAT NADH dehydrogenase subunit 7 OS=Chlorokybus
           atmophyticus GN=nad7 PE=3 SV=1
          Length = 398

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 33/35 (94%), Positives = 34/35 (97%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           FAHLQ LDFMSKNHMLADVVTIIGTQDIVFGE+DR
Sbjct: 364 FAHLQSLDFMSKNHMLADVVTIIGTQDIVFGEIDR 398


>tr|Q9G4E4|Q9G4E4_9STRA NADH dehydrogenase subunit 7
           OS=Thraustochytrium aureum GN=nad7 PE=3 SV=1
          Length = 397

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 31/35 (88%), Positives = 34/35 (97%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           F+HLQGLDFMSK H++ADVVTIIGTQDIVFGEVDR
Sbjct: 363 FSHLQGLDFMSKGHLIADVVTIIGTQDIVFGEVDR 397


>tr|Q8M1F6|Q8M1F6_CHAGL NADH dehydrogenase subunit 7
           OS=Chaetosphaeridium globosum GN=nad7 PE=3 SV=1
          Length = 393

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 32/35 (91%), Positives = 33/35 (94%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           F HLQ LDFMSK+HMLADVVTIIGTQDIVFGEVDR
Sbjct: 359 FVHLQALDFMSKHHMLADVVTIIGTQDIVFGEVDR 393


>tr|Q8W9T0|Q8W9T0_MESVI NADH dehydrogenase subunit 7 OS=Mesostigma
           viride GN=nad7 PE=3 SV=1
          Length = 399

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 32/35 (91%), Positives = 32/35 (91%)
 Frame = +3

Query: 3   FAHLQGLDFMSKNHMLADVVTIIGTQDIVFGEVDR 107
           F HLQGLD MSK HMLADVVTIIGTQDIVFGEVDR
Sbjct: 365 FVHLQGLDMMSKKHMLADVVTIIGTQDIVFGEVDR 399