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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947895
Clone id YMU02A02NGRM0001_C10
Library
Length 549
Definition Adiantum capillus-veneris mRNA. clone: YMU02A02NGRM0001_C10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCGACCTCAGAAAAAACCTTTTCCCAACCCCTTTCTCCTTCTGGGTAGCCAGTACTTTTG
AGGGTGCCCCAGCTGAACAGCAAGCTCTGTTGGAGCTTGAAGATACTGCACAAAGGCTCA
AGCGCGAGAAAGAAACGCTCCGAAATACGTTGAACTATTTAAGTGCAGCAGCAGCTGTGA
AAGATGTGTTTCCTTCTTCCTCTGGGTAAAAGAGGATATCGGTGGCCCAGGCTCAGCCAT
CCTCTATTGCAGTGGCTTTCCTTGTTTTGTATATTCGAAGACAAGAGCTGGATATGCAAT
GTGAAGCCTAGGTGTGCGATTTTTGCCACCTTGTTTGTGGTTGATGCTTGGTGGATGTTC
TGCTGTATGAAACGGCGTCAAGCTGGGTGCTGTTCGTGAGCTAAAGTGGAGGTATTGGTA
AGGTTGTACACTTGCATTGCCCAATCTTTCGGCAAGATGATTGATAATGAGGAAAATCGC
AAAGCTTATCCGTGTCACAAAGCTTAAGGGTCTCCATAATATCATATGCACTGCCGAAGT
CTTGTGCCG
■■Homology search results ■■ -
sp_hit_id Q9YGL6
Definition sp|Q9YGL6|PALM_CHICK Paralemmin OS=Gallus gallus
Align length 55
Score (bit) 31.6
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947895|Adiantum capillus-veneris mRNA, clone:
YMU02A02NGRM0001_C10, 5'
         (549 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9YGL6|PALM_CHICK Paralemmin OS=Gallus gallus GN=PALM PE=2 SV=1     32   2.6  
sp|Q7Z7M1|GP144_HUMAN Probable G-protein coupled receptor 144 OS...    31   3.5  
sp|B0DAD3|XPOT_LACBS Exportin-T OS=Laccaria bicolor (strain S238...    30   7.7  
sp|P98171|RHG04_HUMAN Rho GTPase-activating protein 4 OS=Homo sa...    30   7.8  

>sp|Q9YGL6|PALM_CHICK Paralemmin OS=Gallus gallus GN=PALM PE=2 SV=1
          Length = 386

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +3

Query: 93  ELEDTAQRLKREKETLRNTLNYLSAAAAVKDVFPSSSG*KRISVAQAQPSSIAVA 257
           ELE+T QRL+RE E+L N+ +  S    + +    +   K+ ++   Q S +  A
Sbjct: 82  ELEETIQRLERELESLENSSSVTSTKENLAEAAAPAKEEKKENIPSVQKSPLGTA 136


>sp|Q7Z7M1|GP144_HUMAN Probable G-protein coupled receptor 144
           OS=Homo sapiens GN=GPR144 PE=2 SV=1
          Length = 963

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -1

Query: 396 RTAPSLTPFHTAEHPPS-INHKQGGKNRTPRLHIAYPALVFEYTKQGKPLQ*RMAEPGPP 220
           R AP L+   T+E P   I H+  G +    +H  + + VF++T +G  L     EP  P
Sbjct: 497 RLAPLLSTSMTSERPRMRIQHRHAGLSGVTVIHSWFTSRVFQHTLEGPDL-----EPQAP 551

Query: 219 ISS 211
            SS
Sbjct: 552 ASS 554


>sp|B0DAD3|XPOT_LACBS Exportin-T OS=Laccaria bicolor (strain
           S238N-H82) GN=LOS1 PE=3 SV=1
          Length = 1066

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -2

Query: 443 WAMQVYNLTNTSTLAHEQHPA*RRFIQQNIHQASTTNKVAKIAHLGFTLHIQLLSSNIQN 264
           W + ++   + +T  H +HPA  RF    +      N+   + H  F    Q L++ IQ+
Sbjct: 42  WRLALHIFVDQNTEGHRKHPAQARFFALRVLDEFFDNRFEPLDHESFQAIHQALTAYIQS 101

Query: 263 K 261
           +
Sbjct: 102 E 102


>sp|P98171|RHG04_HUMAN Rho GTPase-activating protein 4 OS=Homo
           sapiens GN=ARHGAP4 PE=1 SV=2
          Length = 946

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 23/85 (27%), Positives = 38/85 (44%)
 Frame = -1

Query: 531 VHMILWRPLSFVTRISFAIFLIINHLAERLGNASVQPYQYLHFSSRTAPSLTPFHTAEHP 352
           V  +LWR  + V  +   +F  +NHLA+      + PY   + +    P+L P    + P
Sbjct: 617 VSRLLWRLPAPVLVVLRYLFTFLNHLAQYSDENMMDPY---NLAVCFGPTLLPVPAGQDP 673

Query: 351 PSINHKQGGKNRTPRLHIAYPALVF 277
            ++   QG  N+  +  I  P  VF
Sbjct: 674 VAL---QGRVNQLVQTLIVQPDRVF 695
tr_hit_id A9RQJ9
Definition tr|A9RQJ9|A9RQJ9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 66
Score (bit) 122.0
E-value 1.0e-26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947895|Adiantum capillus-veneris mRNA, clone:
YMU02A02NGRM0001_C10, 5'
         (549 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RQJ9|A9RQJ9_PHYPA Predicted protein OS=Physcomitrella paten...   122   1e-26
tr|Q9FWT4|Q9FWT4_ARATH F1B16.1 protein (Putative protease) (Prot...   117   4e-25
tr|Q8S9K2|Q8S9K2_ARATH At1g75460/F1B16_22 OS=Arabidopsis thalian...   117   4e-25
tr|Q9FXH3|Q9FXH3_ARATH F6F9.20 protein (Putative uncharacterized...   115   2e-24
tr|A7NT45|A7NT45_VITVI Chromosome chr18 scaffold_1, whole genome...   115   2e-24
tr|Q6Z4A9|Q6Z4A9_ORYSJ Os07g0509700 protein OS=Oryza sativa subs...   111   3e-23
tr|B6SMG8|B6SMG8_MAIZE Peptidase S16, lon OS=Zea mays PE=2 SV=1       111   3e-23
tr|B4FFQ4|B4FFQ4_MAIZE Putative uncharacterized protein OS=Zea m...   111   3e-23
tr|A2YLQ2|A2YLQ2_ORYSI Putative uncharacterized protein OS=Oryza...   111   3e-23
tr|A3BK70|A3BK70_ORYSJ Putative uncharacterized protein OS=Oryza...    82   2e-14
tr|B2J5B3|B2J5B3_NOSP7 Peptidase S16, lon domain protein OS=Nost...    67   8e-10
tr|A0YL65|A0YL65_9CYAN Peptidase S16, lon OS=Lyngbya sp. PCC 810...    67   8e-10
tr|Q2JP14|Q2JP14_SYNJB ATP-dependent protease La domain protein ...    65   2e-09
tr|B1XI61|B1XI61_SYNP2 Putative ATP-dependent proteinase OS=Syne...    65   2e-09
tr|A0ZFC3|A0ZFC3_NODSP Peptidase S16, lon OS=Nodularia spumigena...    65   2e-09
tr|Q2JTE4|Q2JTE4_SYNJA ATP-dependent protease La domain protein ...    65   2e-09
tr|Q8YP65|Q8YP65_ANASP All4335 protein OS=Anabaena sp. (strain P...    64   4e-09
tr|Q55701|Q55701_SYNY3 ATP-dependent proteinase; BsgA OS=Synecho...    64   4e-09
tr|Q3MDM7|Q3MDM7_ANAVT Peptidase S16, lon OS=Anabaena variabilis...    64   4e-09
tr|B8HV46|B8HV46_9CHRO Peptidase S16 lon domain protein OS=Cyano...    64   5e-09
tr|B4VX12|B4VX12_9CYAN ATP-dependent protease La (LON) domain su...    62   2e-08
tr|B0CCC8|B0CCC8_ACAM1 ATP-dependent protease La (LON) domain pr...    62   3e-08
tr|Q7NEB2|Q7NEB2_GLOVI ATP-dependent protease OS=Gloeobacter vio...    61   3e-08
tr|B5W7X9|B5W7X9_SPIMA Peptidase S16 lon domain protein OS=Arthr...    61   3e-08
tr|B7K102|B7K102_SYNP8 Peptidase S16 lon domain protein OS=Synec...    61   4e-08
tr|B4C239|B4C239_9CHRO Peptidase S16 lon domain protein OS=Cyano...    61   4e-08
tr|Q4C268|Q4C268_CROWT Peptidase S16, lon N-terminal OS=Crocosph...    60   8e-08
tr|B1WW85|B1WW85_CYAA5 ATP-dependent protease OS=Cyanothece (str...    60   1e-07
tr|Q118Z0|Q118Z0_TRIEI Peptidase S16, lon-like OS=Trichodesmium ...    59   2e-07
tr|B4WS27|B4WS27_9SYNE ATP-dependent protease La (LON) domain su...    59   2e-07

>tr|A9RQJ9|A9RQJ9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_204775 PE=4 SV=1
          Length = 181

 Score =  122 bits (306), Expect = 1e-26
 Identities = 60/66 (90%), Positives = 63/66 (95%)
 Frame = +3

Query: 3   DLRKNLFPTPFSFWVASTFEGAPAEQQALLELEDTAQRLKREKETLRNTLNYLSAAAAVK 182
           DLRK+LFPTPFSFWV STFEGAPAEQQALLELEDTA RLKREKETLRNTLNYL+AA+AVK
Sbjct: 115 DLRKSLFPTPFSFWVGSTFEGAPAEQQALLELEDTAVRLKREKETLRNTLNYLTAASAVK 174

Query: 183 DVFPSS 200
           D FPSS
Sbjct: 175 DAFPSS 180


>tr|Q9FWT4|Q9FWT4_ARATH F1B16.1 protein (Putative protease)
           (Protease, putative) OS=Arabidopsis thaliana
           GN=At1g75460 PE=2 SV=1
          Length = 278

 Score =  117 bits (293), Expect = 4e-25
 Identities = 58/67 (86%), Positives = 63/67 (94%)
 Frame = +3

Query: 3   DLRKNLFPTPFSFWVASTFEGAPAEQQALLELEDTAQRLKREKETLRNTLNYLSAAAAVK 182
           DLR+N FPTPFSF+V STFEGAP EQQALLELEDTA RLKRE+ETLRNTLNYL+AA+AVK
Sbjct: 212 DLRRNQFPTPFSFFVGSTFEGAPREQQALLELEDTAARLKRERETLRNTLNYLTAASAVK 271

Query: 183 DVFPSSS 203
           DVFPSSS
Sbjct: 272 DVFPSSS 278


>tr|Q8S9K2|Q8S9K2_ARATH At1g75460/F1B16_22 OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 278

 Score =  117 bits (293), Expect = 4e-25
 Identities = 58/67 (86%), Positives = 63/67 (94%)
 Frame = +3

Query: 3   DLRKNLFPTPFSFWVASTFEGAPAEQQALLELEDTAQRLKREKETLRNTLNYLSAAAAVK 182
           DLR+N FPTPFSF+V STFEGAP EQQALLELEDTA RLKRE+ETLRNTLNYL+AA+AVK
Sbjct: 212 DLRRNQFPTPFSFFVGSTFEGAPREQQALLELEDTAARLKRERETLRNTLNYLTAASAVK 271

Query: 183 DVFPSSS 203
           DVFPSSS
Sbjct: 272 DVFPSSS 278


>tr|Q9FXH3|Q9FXH3_ARATH F6F9.20 protein (Putative uncharacterized
           protein At1g19740) OS=Arabidopsis thaliana GN=At1g19740
           PE=2 SV=1
          Length = 278

 Score =  115 bits (288), Expect = 2e-24
 Identities = 57/65 (87%), Positives = 61/65 (93%)
 Frame = +3

Query: 3   DLRKNLFPTPFSFWVASTFEGAPAEQQALLELEDTAQRLKREKETLRNTLNYLSAAAAVK 182
           DLRKN FPTPFSF+V STFEGAP EQQALLELEDTA RLKRE+ETLRNTLNYL+AA+AVK
Sbjct: 212 DLRKNQFPTPFSFFVGSTFEGAPMEQQALLELEDTAARLKRERETLRNTLNYLTAASAVK 271

Query: 183 DVFPS 197
           DVFPS
Sbjct: 272 DVFPS 276


>tr|A7NT45|A7NT45_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014531001
           PE=4 SV=1
          Length = 284

 Score =  115 bits (287), Expect = 2e-24
 Identities = 57/66 (86%), Positives = 62/66 (93%)
 Frame = +3

Query: 3   DLRKNLFPTPFSFWVASTFEGAPAEQQALLELEDTAQRLKREKETLRNTLNYLSAAAAVK 182
           DLR+NLFPTPFSF+V STFEGAP EQQALLELEDT+ RLKREKETLRNTLNYL+AA+AVK
Sbjct: 219 DLRRNLFPTPFSFFVGSTFEGAPREQQALLELEDTSARLKREKETLRNTLNYLTAASAVK 278

Query: 183 DVFPSS 200
           DVF SS
Sbjct: 279 DVFASS 284


>tr|Q6Z4A9|Q6Z4A9_ORYSJ Os07g0509700 protein OS=Oryza sativa subsp.
           japonica GN=P0409B11.11 PE=2 SV=1
          Length = 291

 Score =  111 bits (277), Expect = 3e-23
 Identities = 53/66 (80%), Positives = 61/66 (92%)
 Frame = +3

Query: 3   DLRKNLFPTPFSFWVASTFEGAPAEQQALLELEDTAQRLKREKETLRNTLNYLSAAAAVK 182
           DLR+ LFPTPFSF+V +TFEGAP EQQALLELEDTA RL+RE++TLRNTLNYL+AA+AVK
Sbjct: 222 DLRRGLFPTPFSFYVGNTFEGAPREQQALLELEDTAARLRRERDTLRNTLNYLTAASAVK 281

Query: 183 DVFPSS 200
           D FPSS
Sbjct: 282 DAFPSS 287


>tr|B6SMG8|B6SMG8_MAIZE Peptidase S16, lon OS=Zea mays PE=2 SV=1
          Length = 286

 Score =  111 bits (277), Expect = 3e-23
 Identities = 53/66 (80%), Positives = 61/66 (92%)
 Frame = +3

Query: 3   DLRKNLFPTPFSFWVASTFEGAPAEQQALLELEDTAQRLKREKETLRNTLNYLSAAAAVK 182
           DLR+ LFPTPFSF+V +TFEGAP EQQALLELEDTA RL+RE++TLRNTLNYL+AA+AVK
Sbjct: 217 DLRRGLFPTPFSFYVGNTFEGAPREQQALLELEDTAARLRRERDTLRNTLNYLTAASAVK 276

Query: 183 DVFPSS 200
           D FPSS
Sbjct: 277 DAFPSS 282


>tr|B4FFQ4|B4FFQ4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 289

 Score =  111 bits (277), Expect = 3e-23
 Identities = 53/66 (80%), Positives = 61/66 (92%)
 Frame = +3

Query: 3   DLRKNLFPTPFSFWVASTFEGAPAEQQALLELEDTAQRLKREKETLRNTLNYLSAAAAVK 182
           DLR+ LFPTPFSF+V +TFEGAP EQQALLELEDTA RL+RE++TLRNTLNYL+AA+AVK
Sbjct: 220 DLRRGLFPTPFSFYVGNTFEGAPREQQALLELEDTAARLRRERDTLRNTLNYLTAASAVK 279

Query: 183 DVFPSS 200
           D FPSS
Sbjct: 280 DAFPSS 285


>tr|A2YLQ2|A2YLQ2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_26152 PE=4 SV=1
          Length = 291

 Score =  111 bits (277), Expect = 3e-23
 Identities = 53/66 (80%), Positives = 61/66 (92%)
 Frame = +3

Query: 3   DLRKNLFPTPFSFWVASTFEGAPAEQQALLELEDTAQRLKREKETLRNTLNYLSAAAAVK 182
           DLR+ LFPTPFSF+V +TFEGAP EQQALLELEDTA RL+RE++TLRNTLNYL+AA+AVK
Sbjct: 222 DLRRGLFPTPFSFYVGNTFEGAPREQQALLELEDTAARLRRERDTLRNTLNYLTAASAVK 281

Query: 183 DVFPSS 200
           D FPSS
Sbjct: 282 DAFPSS 287


>tr|A3BK70|A3BK70_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_023442 PE=4 SV=1
          Length = 291

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 39/51 (76%), Positives = 46/51 (90%)
 Frame = +3

Query: 48  ASTFEGAPAEQQALLELEDTAQRLKREKETLRNTLNYLSAAAAVKDVFPSS 200
           A+ FEGAP EQQ +LELEDTA RL+RE++TLRNTLNYL+AA+AVKD FPSS
Sbjct: 237 ATPFEGAPREQQGVLELEDTAARLRRERDTLRNTLNYLTAASAVKDAFPSS 287