DK947899
Clone id YMU02A02NGRM0001_D03
Library
Length 236
Definition Adiantum capillus-veneris mRNA. clone: YMU02A02NGRM0001_D03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
CTCGAAGGGAGATCCTAGAGTGTACGGGGTTAAGTTAAGCCAAGAGGATTTCTCGACGCC
TCTTTTTCCCTCCATTCCATCAAATGAAGTCTATTTCTGCGAAGGTATTATCATTGCCCT
CGGCAAAGAGATGGAACAGAGACACTTGGAGAGCGCAGTACGACGGGGAGTTGTATGCTG
CGTTCGGGAAGGATGAGTCGCCTCTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id A6NNA5
Definition sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens
Align length 19
Score (bit) 28.9
E-value 8.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947899|Adiantum capillus-veneris mRNA, clone:
YMU02A02NGRM0001_D03, 5'
(207 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Hom... 29 8.3

>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo
sapiens GN=DRGX PE=2 SV=1
Length = 263

Score = 28.9 bits (63), Expect = 8.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1

Query: 106 YYHCPRQRDGTETLGERST 162
Y+HCP Q +GT T G S+
Sbjct: 3 YFHCPPQLEGTATFGNHSS 21


tr_hit_id Q3HKA5
Definition tr|Q3HKA5|Q3HKA5_TOBAC Putative uncharacterized protein OS=Nicotiana tabacum
Align length 56
Score (bit) 47.0
E-value 0.0005
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947899|Adiantum capillus-veneris mRNA, clone:
YMU02A02NGRM0001_D03, 5'
(207 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q3HKA5|Q3HKA5_TOBAC Putative uncharacterized protein OS=Nicot... 47 5e-04
tr|Q3C1P2|Q3C1P2_NICSY Putative uncharacterized protein OS=Nicot... 47 5e-04
tr|Q33BX8|Q33BX8_NICTO Putative uncharacterized protein OS=Nicot... 47 5e-04
tr|A7QL08|A7QL08_VITVI Chromosome undetermined scaffold_116, who... 46 8e-04
tr|Q9LD88|Q9LD88_SPIOL Putative uncharacterized protein OS=Spina... 44 0.003
tr|A4GYW1|A4GYW1_POPTR Putative uncharacterized protein OS=Popul... 44 0.004
tr|B1ZFY8|B1ZFY8_METPB Putative uncharacterized protein OS=Methy... 34 4.1

>tr|Q3HKA5|Q3HKA5_TOBAC Putative uncharacterized protein
OS=Nicotiana tabacum PE=4 SV=1
Length = 71

Score = 47.0 bits (110), Expect = 5e-04
Identities = 31/56 (55%), Positives = 35/56 (62%)
Frame = +1

Query: 34 VKPRGFLDASFSLHSIK*SLFLRRYYHCPRQRDGTETLGERSTTGSCMLRSGRMSR 201
V P G L+A F L S L R R++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 14 VGPGGSLNAFFFLLIGVISQRLARV----RKKGGTSTLGERSTTESCMLRSGRMNR 65


>tr|Q3C1P2|Q3C1P2_NICSY Putative uncharacterized protein
OS=Nicotiana sylvestris PE=4 SV=1
Length = 71

Score = 47.0 bits (110), Expect = 5e-04
Identities = 31/56 (55%), Positives = 35/56 (62%)
Frame = +1

Query: 34 VKPRGFLDASFSLHSIK*SLFLRRYYHCPRQRDGTETLGERSTTGSCMLRSGRMSR 201
V P G L+A F L S L R R++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 14 VGPGGSLNAFFFLLIGVISQRLARV----RKKGGTSTLGERSTTESCMLRSGRMNR 65


>tr|Q33BX8|Q33BX8_NICTO Putative uncharacterized protein
OS=Nicotiana tomentosiformis PE=4 SV=1
Length = 71

Score = 47.0 bits (110), Expect = 5e-04
Identities = 31/56 (55%), Positives = 35/56 (62%)
Frame = +1

Query: 34 VKPRGFLDASFSLHSIK*SLFLRRYYHCPRQRDGTETLGERSTTGSCMLRSGRMSR 201
V P G L+A F L S L R R++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 14 VGPGGSLNAFFFLLIGVISQRLARV----RKKGGTSTLGERSTTESCMLRSGRMNR 65


>tr|A7QL08|A7QL08_VITVI Chromosome undetermined scaffold_116, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00001371001 PE=4 SV=1
Length = 73

Score = 46.2 bits (108), Expect = 8e-04
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +1

Query: 121 RQRDGTETLGERSTTGSCMLRSGRMSR 201
R++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 39 RKKGGTSTLGERSTTESCMLRSGRMNR 65


>tr|Q9LD88|Q9LD88_SPIOL Putative uncharacterized protein OS=Spinacia
oleracea PE=4 SV=1
Length = 72

Score = 44.3 bits (103), Expect = 0.003
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +1

Query: 124 QRDGTETLGERSTTGSCMLRSGRMSR 201
++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 41 KKGGTSTLGERSTTESCMLRSGRMNR 66


>tr|A4GYW1|A4GYW1_POPTR Putative uncharacterized protein OS=Populus
trichocarpa GN=Poptr_cp074 PE=4 SV=1
Length = 71

Score = 43.9 bits (102), Expect = 0.004
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +1

Query: 121 RQRDGTETLGERSTTGSCMLRSGRMSR 201
R++ GT TLGERST SCMLRSGRM+R
Sbjct: 39 RKKGGTSTLGERSTPESCMLRSGRMNR 65


>tr|B1ZFY8|B1ZFY8_METPB Putative uncharacterized protein
OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB
13946 / BJ001) GN=Mpop_0129 PE=4 SV=1
Length = 176

Score = 33.9 bits (76), Expect = 4.1
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +3

Query: 3 RREILECTGLS*AKRISRRLFFPPFHQMKSISAKVLSL 116
R E+LECT + K I R+L PP Q+K +S+ +L L
Sbjct: 53 RNEVLECTLDAQQKNILRKLLNPPKVQVKDVSSPILDL 90