DK947917 |
Clone id |
YMU02A02NGRM0001_F04 |
Library |
YMU02 |
Length |
341 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A02NGRM0001_F04. 5' end sequence. |
Accession |
DK947917 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL24Contig1 |
Sequence |
GCAAGTTTAAAATTAATTACCAGTTCTACCGAGTGTTTCCTAATGGCGAGGTGCAGTACC TTCATCCCAAGGACGGAGTATACCCCGAGAAAGTGAACCCCGGCCGCAAGGGTGTTGGCG TGAACTTGCGCTCTATTGGAGAGAATGTAAACCCCGCCACAGTCAAGTTCACTGGCAAGA ACGCTTACGATTTGTGAGGAGCATGTTGCTGACCCCTTTATGATTCTTTCTGTAAGTGGT CTGTGGCAAGCTCATGTCTTCTATCTTTCATGATTGTAAAGTTTTTCTGTAATAGACTAC TTCTTCCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SA56 |
Definition |
sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana |
Align length |
64 |
Score (bit) |
118.0 |
E-value |
8.0e-27 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947917|Adiantum capillus-veneris mRNA, clone: YMU02A02NGRM0001_F04, 5' (307 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2... 118 8e-27 sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1... 118 8e-27 sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, c... 117 1e-26 sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, c... 117 2e-26 sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, c... 114 2e-25 sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, c... 114 2e-25 sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, c... 113 3e-25 sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS... 92 1e-18 sp|P51279|PSAD_PORPU Photosystem I reaction center subunit II OS... 91 1e-18 sp|Q9T4W8|PSAD_CYAPA Photosystem I reaction center subunit II, c... 91 2e-18 sp|P31089|PSAD_ANAVT Photosystem I reaction center subunit II OS... 90 3e-18 sp|Q1XDK7|PSAD_PORYE Photosystem I reaction center subunit II OS... 89 5e-18 sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, c... 89 5e-18 sp|O96800|PSAD_SKECO Photosystem I reaction center subunit II OS... 89 7e-18 sp|P49481|PSAD_ODOSI Photosystem I reaction center subunit II OS... 89 7e-18 sp|Q9TLR2|PSAD_CYACA Photosystem I reaction center subunit II OS... 87 3e-17 sp|P58573|PSAD_ANASP Photosystem I reaction center subunit II OS... 87 3e-17 sp|P19569|PSAD_SYNY3 Photosystem I reaction center subunit II OS... 84 2e-16 sp|P0A422|PSAD_THEVL Photosystem I reaction center subunit II OS... 82 8e-16 sp|P0A420|PSAD_THEEB Photosystem I reaction center subunit II OS... 82 8e-16 sp|P0A421|PSAD_SYNEN Photosystem I reaction center subunit II OS... 82 8e-16 sp|O07115|PSAD_MASLA Photosystem I reaction center subunit II OS... 81 2e-15 sp|P23076|PSAD_SYNP6 Photosystem I reaction center subunit II OS... 80 3e-15 sp|P56596|PSAD_NOSS8 Photosystem I reaction center subunit II OS... 80 3e-15 sp|P23808|PSAD_FREDI Photosystem I reaction center subunit II OS... 77 3e-14 sp|Q7NF26|PSAD_GLOVI Photosystem I reaction center subunit II OS... 69 7e-12 sp|Q5HW65|GLYA_CAMJR Serine hydroxymethyltransferase OS=Campylob... 31 1.7 sp|A1VYC2|GLYA_CAMJJ Serine hydroxymethyltransferase OS=Campylob... 31 1.7 sp|P24531|GLYA_CAMJE Serine hydroxymethyltransferase OS=Campylob... 31 1.7 sp|A7H4X6|GLYA_CAMJD Serine hydroxymethyltransferase OS=Campylob... 31 1.7
>sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1 Length = 204
Score = 118 bits (296), Expect = 8e-27 Identities = 52/64 (81%), Positives = 59/64 (92%) Frame = +3
Query: 3 KFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKN 182 K+KI YQFYRVFPNGEVQYLHPKDGVYPEK NPGR+GVG+N+RSIG+NV+P VKFTGK Sbjct: 141 KYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQ 200
Query: 183 AYDL 194 +YDL Sbjct: 201 SYDL 204
>sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1 Length = 208
Score = 118 bits (296), Expect = 8e-27 Identities = 52/64 (81%), Positives = 59/64 (92%) Frame = +3
Query: 3 KFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKN 182 K+KI YQFYRVFPNGEVQYLHPKDGVYPEK NPGR+GVG+N+RSIG+NV+P VKFTGK Sbjct: 145 KYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQ 204
Query: 183 AYDL 194 +YDL Sbjct: 205 SYDL 208
>sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1 Length = 207
Score = 117 bits (294), Expect = 1e-26 Identities = 53/64 (82%), Positives = 57/64 (89%) Frame = +3
Query: 3 KFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKN 182 K+KI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+GVG N RSIG+NV+P VKFTGK Sbjct: 144 KYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQ 203
Query: 183 AYDL 194 YDL Sbjct: 204 VYDL 207
>sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2 Length = 212
Score = 117 bits (293), Expect = 2e-26 Identities = 52/64 (81%), Positives = 59/64 (92%) Frame = +3
Query: 3 KFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKN 182 K+KI YQFYRVFP+GEVQYLHPKDGVYPEKVNPGR+GVG+N+RSIG+NV+P VKFTGK Sbjct: 149 KYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQ 208
Query: 183 AYDL 194 YDL Sbjct: 209 PYDL 212
>sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1 Length = 205
Score = 114 bits (285), Expect = 2e-25 Identities = 51/64 (79%), Positives = 58/64 (90%) Frame = +3
Query: 3 KFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKN 182 K+KI YQFYRVFPNGEVQYLHPKDGVYPEKVN GR+GVG N RSIG+NV+P VKFTGKN Sbjct: 142 KYKIAYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKN 201
Query: 183 AYDL 194 ++D+ Sbjct: 202 SFDI 205
>sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1 Length = 208
Score = 114 bits (284), Expect = 2e-25 Identities = 51/64 (79%), Positives = 56/64 (87%) Frame = +3
Query: 3 KFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKN 182 K+KINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+GVG N RSIG+N + VKFTGK Sbjct: 145 KYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNKSAIEVKFTGKQ 204
Query: 183 AYDL 194 YD+ Sbjct: 205 VYDI 208
>sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1 Length = 204
Score = 113 bits (282), Expect = 3e-25 Identities = 51/64 (79%), Positives = 56/64 (87%) Frame = +3
Query: 3 KFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKN 182 K+KINY+FYRVFPNGEVQYLHPKDGVYPEKVN GR+GVG N RSIG+N +P VKFTGK Sbjct: 141 KYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNKSPIEVKFTGKQ 200
Query: 183 AYDL 194 YDL Sbjct: 201 VYDL 204
>sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1 Length = 141
Score = 91.7 bits (226), Expect = 1e-18 Identities = 43/63 (68%), Positives = 52/63 (82%), Gaps = 1/63 (1%) Frame = +3
Query: 6 FKI-NYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKN 182 FKI +Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR GVG SIG+N+NPA +KFT K+ Sbjct: 79 FKITDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRIGVGNVSHSIGKNLNPAQIKFTNKS 138
Query: 183 AYD 191 D Sbjct: 139 FCD 141
>sp|P51279|PSAD_PORPU Photosystem I reaction center subunit II OS=Porphyra purpurea GN=psaD PE=3 SV=1 Length = 141
Score = 91.3 bits (225), Expect = 1e-18 Identities = 44/64 (68%), Positives = 49/64 (76%), Gaps = 1/64 (1%) Frame = +3
Query: 3 KFKIN-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGK 179 KFKI+ Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR + SIG+NVNP VKFT K Sbjct: 78 KFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNAGRASINSVDHSIGKNVNPINVKFTNK 137
Query: 180 NAYD 191 YD Sbjct: 138 ATYD 141
>sp|Q9T4W8|PSAD_CYAPA Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1 Length = 220
Score = 90.5 bits (223), Expect = 2e-18 Identities = 41/64 (64%), Positives = 52/64 (81%), Gaps = 1/64 (1%) Frame = +3
Query: 3 KFKI-NYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGK 179 KFKI +Y+ YRV+P+GEVQ+LHPKDGV+PEKVNPGR VG N R IG+N +PA +KF G+ Sbjct: 152 KFKITDYKIYRVYPSGEVQFLHPKDGVFPEKVNPGRVAVGSNKRRIGQNPDPAKLKFKGQ 211
Query: 180 NAYD 191 +D Sbjct: 212 ETFD 215
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5AEB4 |
Definition |
tr|A5AEB4|A5AEB4_VITVI Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgun sequence) OS=Vitis vinifera |
Align length |
64 |
Score (bit) |
123.0 |
E-value |
4.0e-27 |
Report |
|