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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947921
Clone id YMU02A02NGRM0001_F08
Library
Length 337
Definition Adiantum capillus-veneris mRNA. clone: YMU02A02NGRM0001_F08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATTTCAGGTGGCTGTTTCTCTAGCAGGATGTGTGTATCTTCTTAATTATAGGCTCAAAA
GCATTGGGCGGTCCTTCATGCTTGGATTTGGCGGGCTTGTTGTGGGATGGTTGGTTGGCT
CCTTCATTGTACCTGTCGTGCCAATGGCTTTACTGCCTCCGAATTGGAGCCTAGAAATCA
TAACGGCACTGATATCATATGTATTCATGTGGGTTGCATGTACTTTCTTGAAGTAAGGAC
ACCTTATAGATATTGTATACACGGGCCTCAAAAGGCTGGACTTGCAAGTGGTGGCTCTAG
CACTCACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id A5F0U5
Definition sp|A5F0U5|RUMB_VIBC3 23S rRNA (uracil-5-)-methyltransferase rumB OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
Align length 48
Score (bit) 32.0
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947921|Adiantum capillus-veneris mRNA, clone:
YMU02A02NGRM0001_F08, 5'
         (308 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A5F0U5|RUMB_VIBC3 23S rRNA (uracil-5-)-methyltransferase rumB...    32   0.99 
sp|Q9KL20|RUMB_VIBCH 23S rRNA (uracil-5-)-methyltransferase rumB...    30   2.9  
sp|P36710|E434_ADE12 Early E4 34 kDa protein OS=Human adenovirus...    26   4.4  
sp|Q3TIU4|PDE12_MOUSE 2',5'-phosphodiesterase 12 OS=Mus musculus...    30   4.9  
sp|Q9LJK1|FUT11_ARATH Glycoprotein 3-alpha-L-fucosyltransferase ...    30   4.9  
sp|Q9YH92|CLDX_DANRE Claudin-like protein ZF4A22 OS=Danio rerio ...    30   4.9  
sp|O74444|MU122_SCHPO Meiotically up-regulated gene 122 protein ...    29   6.4  
sp|Q9NRM1|ENAM_HUMAN Enamelin OS=Homo sapiens GN=ENAM PE=2 SV=3        29   6.4  

>sp|A5F0U5|RUMB_VIBC3 23S rRNA (uracil-5-)-methyltransferase rumB
           OS=Vibrio cholerae serotype O1 (strain ATCC 39541 /
           Ogawa 395 / O395) GN=rumB PE=3 SV=1
          Length = 375

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
 Frame = +2

Query: 53  AQKHWAVLHAWI--------WRACCGMVGWLLHCTCRANGFTASELEP 172
           A++ +A   AW+        W   CG+ G+ LHC       T  E+EP
Sbjct: 218 AEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPNTAVTGIEIEP 265


>sp|Q9KL20|RUMB_VIBCH 23S rRNA (uracil-5-)-methyltransferase rumB
           OS=Vibrio cholerae GN=rumB PE=3 SV=1
          Length = 375

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
 Frame = +2

Query: 53  AQKHWAVLHAWI--------WRACCGMVGWLLHCTCRANGFTASELEP 172
           A++ +A    W+        W   CG+ G+ LHC       T  E+EP
Sbjct: 218 AEQLYATARTWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEP 265


>sp|P36710|E434_ADE12 Early E4 34 kDa protein OS=Human adenovirus A
           serotype 12 PE=3 SV=1
          Length = 291

 Score = 26.2 bits (56), Expect(2) = 4.4
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 165 WSLEIITALISYVFMWVACTFLK*GHLI--DIVYTGLKRLDLQVVA 296
           W  E++  L+    M+V  TF++  HLI   I+Y G   L L+ V+
Sbjct: 150 WYREVVNHLMPKEVMYVGSTFVRGRHLIYFKIMYDGHAWLALEKVS 195



 Score = 22.3 bits (46), Expect(2) = 4.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 68  AVLHAWIWRACCGMVGWLLHCTCRANG 148
           A ++  + +   G   WL+HC C+  G
Sbjct: 94  ATINVEVTQLLHGHERWLIHCHCQRPG 120


>sp|Q3TIU4|PDE12_MOUSE 2',5'-phosphodiesterase 12 OS=Mus musculus
           GN=Pde12 PE=2 SV=2
          Length = 608

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 143 WHDRYNEGANQPSHNKPAKSKHEGPPNAF--EPIIKKIHTSC 24
           W+     GA +P  + PA S H   P+A+    + ++++T C
Sbjct: 196 WYKEVKPGAAEPGDSGPASSSHSSQPSAWIETGVDERVYTPC 237


>sp|Q9LJK1|FUT11_ARATH Glycoprotein 3-alpha-L-fucosyltransferase A
           OS=Arabidopsis thaliana GN=FUT11 PE=2 SV=1
          Length = 501

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -1

Query: 116 NQPSHNKPAKSKHEGPPNAFEPII--KKIHTSC 24
           N  ++N+  + KHEGP ++F+ +I    +H+SC
Sbjct: 332 NPDAYNQTLRWKHEGPSDSFKALIDMAAVHSSC 364


>sp|Q9YH92|CLDX_DANRE Claudin-like protein ZF4A22 OS=Danio rerio
           GN=cldn7 PE=2 SV=1
          Length = 215

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
 Frame = +3

Query: 159 PNWSLE------IITALISYVFMWVACTFLK*GHLIDIVYTGLKRLD--------LQVVA 296
           P W +       IITA+  Y  +W++C +   G     VY  + +LD        L VVA
Sbjct: 28  PQWKMSAYVGDNIITAIAMYQGLWMSCAYQSTGQQQCKVYDSVLQLDSALQATRALMVVA 87

Query: 297 LALT 308
           + LT
Sbjct: 88  ILLT 91


>sp|O74444|MU122_SCHPO Meiotically up-regulated gene 122 protein
           OS=Schizosaccharomyces pombe GN=mug122 PE=1 SV=1
          Length = 749

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
 Frame = -1

Query: 140 HDRYNEGANQPSHNKPAKSKHEG-------PPNAFE 54
           H+ Y   + QP+ N PA   H G        PNAFE
Sbjct: 515 HEPYRPASTQPTENPPAMPDHNGSPTTEPPKPNAFE 550


>sp|Q9NRM1|ENAM_HUMAN Enamelin OS=Homo sapiens GN=ENAM PE=2 SV=3
          Length = 1142

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 113 QPSHNKPAKSKHEGPPNAFEP 51
           QPSHN+P   +   PP AF P
Sbjct: 141 QPSHNQPQPEEEAQPPQAFPP 161
tr_hit_id A9SGZ3
Definition tr|A9SGZ3|A9SGZ3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 77
Score (bit) 92.4
E-value 1.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947921|Adiantum capillus-veneris mRNA, clone:
YMU02A02NGRM0001_F08, 5'
         (308 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SGZ3|A9SGZ3_PHYPA Predicted protein OS=Physcomitrella paten...    92   1e-17
tr|A9TGC1|A9TGC1_PHYPA Predicted protein OS=Physcomitrella paten...    90   5e-17
tr|A9NX64|A9NX64_PICSI Putative uncharacterized protein OS=Picea...    89   1e-16
tr|A9SI00|A9SI00_PHYPA Predicted protein OS=Physcomitrella paten...    87   4e-16
tr|A7PGK1|A7PGK1_VITVI Chromosome chr17 scaffold_16, whole genom...    84   3e-15
tr|A5AD93|A5AD93_VITVI Putative uncharacterized protein OS=Vitis...    84   3e-15
tr|Q9FN50|Q9FN50_ARATH Emb|CAB62636.1 (Cell growth defect factor...    82   1e-14
tr|B7FG75|B7FG75_MEDTR Putative uncharacterized protein OS=Medic...    78   3e-13
tr|B6TCK1|B6TCK1_MAIZE DnaJ domain containing protein OS=Zea may...    78   3e-13
tr|Q7EYD0|Q7EYD0_ORYSJ Putative uncharacterized protein P0477F03...    77   3e-13
tr|Q0J5P0|Q0J5P0_ORYSJ Os08g0416900 protein (Fragment) OS=Oryza ...    77   3e-13
tr|A9S115|A9S115_PHYPA Predicted protein (Fragment) OS=Physcomit...    77   3e-13
tr|Q6H5B0|Q6H5B0_ORYSJ Os09g0380200 protein OS=Oryza sativa subs...    76   7e-13
tr|A3BYC5|A3BYC5_ORYSJ Putative uncharacterized protein OS=Oryza...    76   7e-13
tr|A2Z0Q5|A2Z0Q5_ORYSI Putative uncharacterized protein OS=Oryza...    76   7e-13
tr|A3BT56|A3BT56_ORYSJ Putative uncharacterized protein OS=Oryza...    73   8e-12
tr|B4FT56|B4FT56_MAIZE Putative uncharacterized protein OS=Zea m...    72   1e-11
tr|Q307Y4|Q307Y4_SOLTU Cell growth defect factor-like OS=Solanum...    72   2e-11
tr|Q60D81|Q60D81_BRAOL Putative Expressed protein OS=Brassica ol...    52   2e-05
tr|A7R0J6|A7R0J6_VITVI Chromosome undetermined scaffold_310, who...    50   4e-05
tr|A4SA03|A4SA03_OSTLU Predicted protein OS=Ostreococcus lucimar...    47   6e-04
tr|B6TKC3|B6TKC3_MAIZE Putative uncharacterized protein OS=Zea m...    46   0.001
tr|Q0DTD2|Q0DTD2_ORYSJ Os03g0255200 protein OS=Oryza sativa subs...    44   0.004
tr|B8AKA7|B8AKA7_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.004
tr|B4FF72|B4FF72_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.004
tr|Q9SD32|Q9SD32_ARATH Putative uncharacterized protein F24M12.1...    37   0.50 
tr|Q94C78|Q94C78_ARATH Putative uncharacterized protein At3g5114...    37   0.50 
tr|B4VLV1|B4VLV1_9CYAN Putative uncharacterized protein OS=Micro...    34   4.2  

>tr|A9SGZ3|A9SGZ3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_129803 PE=4 SV=1
          Length = 203

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 42/77 (54%), Positives = 54/77 (70%)
 Frame = +3

Query: 3   FQVAVSLAGCVYLLNYRLKSIGRSFMXXXXXXXXXXXXXSFIVPVVPMALLPPNWSLEII 182
           FQVAVSLA CVY +N RLKS+GR+FM             S ++PV+P  L+P  WSLE+ 
Sbjct: 127 FQVAVSLAACVYFINLRLKSLGRAFMLGLSSLVVGWVFGSVLIPVIPSQLIPRAWSLELS 186

Query: 183 TALISYVFMWVACTFLK 233
           TAL+SYVF+W +CTFL+
Sbjct: 187 TALVSYVFLWFSCTFLR 203


>tr|A9TGC1|A9TGC1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_222052 PE=4 SV=1
          Length = 262

 Score = 90.1 bits (222), Expect = 5e-17
 Identities = 40/77 (51%), Positives = 54/77 (70%)
 Frame = +3

Query: 3   FQVAVSLAGCVYLLNYRLKSIGRSFMXXXXXXXXXXXXXSFIVPVVPMALLPPNWSLEII 182
           FQVAVSLA CVY +N RL+S+GR+F+             S ++PV+P  L+P  WSLE+ 
Sbjct: 186 FQVAVSLAACVYFINLRLQSLGRAFVLGLGSLVVGWVFGSILIPVIPPLLIPRTWSLELS 245

Query: 183 TALISYVFMWVACTFLK 233
           TAL+SYVF+W +CTFL+
Sbjct: 246 TALVSYVFLWFSCTFLR 262


>tr|A9NX64|A9NX64_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 279

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 39/77 (50%), Positives = 56/77 (72%)
 Frame = +3

Query: 3   FQVAVSLAGCVYLLNYRLKSIGRSFMXXXXXXXXXXXXXSFIVPVVPMALLPPNWSLEII 182
           FQVAVSL  C+Y LN ++KSIGR+ +             S ++PV+P++LLP  W+LE++
Sbjct: 203 FQVAVSLVTCIYFLNEKVKSIGRACVLGFGALAVGWLFGSLVIPVIPLSLLPVTWTLELV 262

Query: 183 TALISYVFMWVACTFLK 233
           TALISY+F+++ACTFLK
Sbjct: 263 TALISYIFLFIACTFLK 279


>tr|A9SI00|A9SI00_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_212552 PE=4 SV=1
          Length = 214

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 39/77 (50%), Positives = 53/77 (68%)
 Frame = +3

Query: 3   FQVAVSLAGCVYLLNYRLKSIGRSFMXXXXXXXXXXXXXSFIVPVVPMALLPPNWSLEII 182
           FQVA+SLA CVY LN RLKS+ R+ +             S ++PV+P  +LP +WSLE+ 
Sbjct: 138 FQVAISLAACVYFLNDRLKSVARASVLGVSALVLGWVLGSVLMPVIPKQILPKSWSLELS 197

Query: 183 TALISYVFMWVACTFLK 233
           TAL+SY+F+W +CTFLK
Sbjct: 198 TALVSYIFLWFSCTFLK 214


>tr|A7PGK1|A7PGK1_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017588001
           PE=4 SV=1
          Length = 92

 Score = 84.3 bits (207), Expect = 3e-15
 Identities = 37/77 (48%), Positives = 54/77 (70%)
 Frame = +3

Query: 3   FQVAVSLAGCVYLLNYRLKSIGRSFMXXXXXXXXXXXXXSFIVPVVPMALLPPNWSLEII 182
           FQVAVSLA C+Y LN + KS+ R+F+             SF+VP++P  LL P W+LE++
Sbjct: 16  FQVAVSLAACIYFLNEKTKSLARAFIIGLGSLVAGWVCGSFLVPMIPSFLLRPTWTLELL 75

Query: 183 TALISYVFMWVACTFLK 233
           T+L++YVF+++ CTFLK
Sbjct: 76  TSLVAYVFLFLGCTFLK 92


>tr|A5AD93|A5AD93_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_017550 PE=4 SV=1
          Length = 235

 Score = 84.3 bits (207), Expect = 3e-15
 Identities = 37/77 (48%), Positives = 54/77 (70%)
 Frame = +3

Query: 3   FQVAVSLAGCVYLLNYRLKSIGRSFMXXXXXXXXXXXXXSFIVPVVPMALLPPNWSLEII 182
           FQVAVSLA C+Y LN + KS+ R+F+             SF+VP++P  LL P W+LE++
Sbjct: 159 FQVAVSLAACIYFLNEKTKSLARAFIIGLGSLVAGWVCGSFLVPMIPSFLLRPTWTLELL 218

Query: 183 TALISYVFMWVACTFLK 233
           T+L++YVF+++ CTFLK
Sbjct: 219 TSLVAYVFLFLGCTFLK 235


>tr|Q9FN50|Q9FN50_ARATH Emb|CAB62636.1 (Cell growth defect factor)
           (At5g23040/MYJ24_3) OS=Arabidopsis thaliana GN=AtCDF1
           PE=2 SV=1
          Length = 258

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 36/77 (46%), Positives = 54/77 (70%)
 Frame = +3

Query: 3   FQVAVSLAGCVYLLNYRLKSIGRSFMXXXXXXXXXXXXXSFIVPVVPMALLPPNWSLEII 182
           FQVAVSLA CVY LN + KS+GR+ +             S I+P++P  L+ P W+LE++
Sbjct: 182 FQVAVSLAACVYFLNEKTKSLGRACLIGIGALVAGWFCGSLIIPMIPTFLIQPTWTLELL 241

Query: 183 TALISYVFMWVACTFLK 233
           T+L++YVF++++CTFLK
Sbjct: 242 TSLVAYVFLFLSCTFLK 258


>tr|B7FG75|B7FG75_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 86

 Score = 77.8 bits (190), Expect = 3e-13
 Identities = 34/77 (44%), Positives = 49/77 (63%)
 Frame = +3

Query: 3   FQVAVSLAGCVYLLNYRLKSIGRSFMXXXXXXXXXXXXXSFIVPVVPMALLPPNWSLEII 182
           FQVA+SLA C+Y LN + KS+ R+F+             S +VP +P  LL P WSLE++
Sbjct: 10  FQVAISLAACIYFLNEKTKSLARAFVIGFGALVAGWVSGSLLVPNIPTMLLRPTWSLELL 69

Query: 183 TALISYVFMWVACTFLK 233
           T+L+ Y F+++ CTF K
Sbjct: 70  TSLVVYFFLFIGCTFFK 86


>tr|B6TCK1|B6TCK1_MAIZE DnaJ domain containing protein OS=Zea mays
           PE=2 SV=1
          Length = 262

 Score = 77.8 bits (190), Expect = 3e-13
 Identities = 34/77 (44%), Positives = 51/77 (66%)
 Frame = +3

Query: 3   FQVAVSLAGCVYLLNYRLKSIGRSFMXXXXXXXXXXXXXSFIVPVVPMALLPPNWSLEII 182
           FQ+A+SLA C+Y LN ++K++ R+               S +VPV+P  ++PP WSLE++
Sbjct: 186 FQLAMSLASCIYFLNEKMKNLVRASTTGFGIFVGGWILGSLLVPVIPAFVIPPTWSLELL 245

Query: 183 TALISYVFMWVACTFLK 233
           T+L +Y FM+V CTFLK
Sbjct: 246 TSLTAYAFMFVGCTFLK 262


>tr|Q7EYD0|Q7EYD0_ORYSJ Putative uncharacterized protein
           P0477F03.101 (Putative uncharacterized protein
           P0433E10.25) OS=Oryza sativa subsp. japonica
           GN=P0477F03.101 PE=4 SV=1
          Length = 114

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 31/77 (40%), Positives = 52/77 (67%)
 Frame = +3

Query: 3   FQVAVSLAGCVYLLNYRLKSIGRSFMXXXXXXXXXXXXXSFIVPVVPMALLPPNWSLEII 182
           FQ+A+SL  C+Y LN ++K++ R+ M             S +VPV+P   +PP WS+E++
Sbjct: 38  FQLALSLVSCIYFLNEKMKNLSRASMTGFGVFVGGWIVGSLLVPVIPTFAIPPTWSIELL 97

Query: 183 TALISYVFMWVACTFLK 233
           ++L++YVF+++ CTFLK
Sbjct: 98  SSLVAYVFLFLGCTFLK 114