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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947923
Clone id YMU02A02NGRM0001_F10
Library
Length 254
Definition Adiantum capillus-veneris mRNA. clone: YMU02A02NGRM0001_F10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTGAGATACAGTTTTTGCTTTACTTTTGAAAGCACGACTATTGCAAGCCTAAAAGGGTTT
GCATTTTGCAATTTTCCCCCATTTCTTTCTTTGACTATTGGTTATTGTTGCCGAGACAGT
TAATGTTGTTTCCAAATGTATCAGGGTGTCCATCATTGCATCTCTCTGAAGTAAAAATAA
CTCATAACTACAGTTCTTGTGTATAACTCGACCAGTGTTTTCCTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q66IV1
Definition sp|Q66IV1|CK009_XENLA Uncharacterized protein C11orf9 homolog OS=Xenopus laevis
Align length 51
Score (bit) 29.6
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947923|Adiantum capillus-veneris mRNA, clone:
YMU02A02NGRM0001_F10, 5'
         (225 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q66IV1|CK009_XENLA Uncharacterized protein C11orf9 homolog OS...    30   4.8  

>sp|Q66IV1|CK009_XENLA Uncharacterized protein C11orf9 homolog
            OS=Xenopus laevis PE=2 SV=1
          Length = 1092

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
 Frame = +3

Query: 57   VCILQFSPISFFDYWLLLPRQLMLF------PNVSGCPSLHLSEVKITHNY 191
            VC+ Q SP S      LLP Q   F      P  SGC  L +   ++T  Y
Sbjct: 1034 VCVTQVSPTSHLWSLQLLPSQDFTFHLRVSPPGASGCDDLSIDPSQVTDYY 1084
tr_hit_id A7LTQ9
Definition tr|A7LTQ9|A7LTQ9_BACOV Putative uncharacterized protein OS=Bacteroides ovatus ATCC 8483
Align length 25
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947923|Adiantum capillus-veneris mRNA, clone:
YMU02A02NGRM0001_F10, 5'
         (225 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7LTQ9|A7LTQ9_BACOV Putative uncharacterized protein OS=Bacte...    33   7.1  

>tr|A7LTQ9|A7LTQ9_BACOV Putative uncharacterized protein
           OS=Bacteroides ovatus ATCC 8483 GN=BACOVA_01204 PE=4
           SV=1
          Length = 638

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 96  YWLLLPRQLMLFPNVSGCPSLHLSE 170
           YWL  PR  ++F NV GCP++H  E
Sbjct: 471 YWLDRPRTSLVFYNVRGCPAVHCIE 495