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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947935
Clone id YMU02A02NGRM0001_G12
Library
Length 249
Definition Adiantum capillus-veneris mRNA. clone: YMU02A02NGRM0001_G12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATGATGCTGACTTCACATGGGAGACAGTGAAGCCCCTCAAGTTTGAGAAGGCTTAGGCC
AAAGTTTTGTGGTAGTTGCCTGCTGGAAAAGTTTTAGTATGAGGTTTTGGGTCAACTGAT
GGGATCTTTTTTATTCTAATACCTTGGACATGACATTTTTTGTGTTCAGCTCGATATTTG
ATGTTTGATCACTACCTTAAAGTTTTGCTTTAAAAAAACAAAAAAAAAAAAGAAAAAAAA
AAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q4LB22
Definition sp|Q4LB22|METK3_HORVU S-adenosylmethionine synthetase 3 OS=Hordeum vulgare
Align length 18
Score (bit) 39.7
E-value 0.005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947935|Adiantum capillus-veneris mRNA, clone:
YMU02A02NGRM0001_G12, 5'
         (211 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4LB22|METK3_HORVU S-adenosylmethionine synthetase 3 OS=Horde...    40   0.005
sp|Q4LB23|METK2_HORVU S-adenosylmethionine synthetase 2 OS=Horde...    40   0.005
sp|P50299|METK1_HORVU S-adenosylmethionine synthetase 1 OS=Horde...    40   0.005
sp|Q6F3F1|METK4_ATRNU S-adenosylmethionine synthetase 4 OS=Atrip...    39   0.006
sp|Q6F3F0|METK3_ATRNU S-adenosylmethionine synthetase 3 OS=Atrip...    39   0.006
sp|Q6F3F3|METK2_ATRNU S-adenosylmethionine synthetase 2 OS=Atrip...    39   0.006
sp|Q7XZR1|METK1_ATRNU S-adenosylmethionine synthetase 1 OS=Atrip...    39   0.006
sp|P50300|METK_PINBN S-adenosylmethionine synthetase OS=Pinus ba...    39   0.008
sp|Q9FVG7|METK2_PINCO S-adenosylmethionine synthetase 2 OS=Pinus...    39   0.008
sp|A6XMY9|METK1_TRIMO S-adenosylmethionine synthetase 1 OS=Triti...    38   0.014
sp|A9NYY0|METK2_PICSI S-adenosylmethionine synthetase 2 OS=Picea...    38   0.018
sp|P93254|METK_MESCR S-adenosylmethionine synthetase OS=Mesembry...    37   0.023
sp|P50303|METK3_ACTCH S-adenosylmethionine synthetase 3 (Fragmen...    37   0.023
sp|Q9FPL6|METK2_SUASA S-adenosylmethionine synthetase 2 OS=Suaed...    37   0.023
sp|Q56TU3|METK2_DAUCA S-adenosylmethionine synthetase 2 OS=Daucu...    37   0.023
sp|A7Q0V4|METK5_VITVI S-adenosylmethionine synthetase 5 OS=Vitis...    37   0.030
sp|Q96551|METK1_CATRO S-adenosylmethionine synthetase 1 OS=Catha...    37   0.030
sp|Q9SBQ7|METK3_PETHY S-adenosylmethionine synthetase 3 OS=Petun...    36   0.052
sp|P93438|METK2_ORYSJ S-adenosylmethionine synthetase 2 OS=Oryza...    36   0.052
sp|A7PRJ6|METK4_VITVI S-adenosylmethionine synthetase 4 OS=Vitis...    36   0.068
sp|Q96552|METK2_CATRO S-adenosylmethionine synthetase 2 OS=Catha...    36   0.068
sp|Q6GV10|METK_SOLBR S-adenosylmethionine synthetase OS=Solanum ...    35   0.089
sp|Q8W3Y4|METK_PHALU S-adenosylmethionine synthetase OS=Phaseolu...    35   0.089
sp|A4PU48|METK_MEDTR S-adenosylmethionine synthetase OS=Medicago...    35   0.089
sp|A7NVX9|METK2_VITVI S-adenosylmethionine synthetase 2 OS=Vitis...    35   0.089
sp|P31156|METK2_PETCR S-adenosylmethionine synthetase 2 (Fragmen...    35   0.089
sp|Q4H1G3|METK2_BETVU S-adenosylmethionine synthetase 2 OS=Beta ...    35   0.089
sp|Q307Y9|METK1_SOLTU S-adenosylmethionine synthetase 1 OS=Solan...    35   0.089
sp|P43280|METK1_SOLLC S-adenosylmethionine synthetase 1 OS=Solan...    35   0.089
sp|A9P822|METK1_POPTR S-adenosylmethionine synthetase 1 OS=Popul...    35   0.089

>sp|Q4LB22|METK3_HORVU S-adenosylmethionine synthetase 3 OS=Hordeum
           vulgare GN=SAM3 PE=2 SV=1
          Length = 394

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEKA 54
           DDADFTWE VKPLKF+KA
Sbjct: 375 DDADFTWEVVKPLKFDKA 392


>sp|Q4LB23|METK2_HORVU S-adenosylmethionine synthetase 2 OS=Hordeum
           vulgare GN=SAM2 PE=2 SV=1
          Length = 394

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEKA 54
           DDADFTWE VKPLKF+KA
Sbjct: 375 DDADFTWEVVKPLKFDKA 392


>sp|P50299|METK1_HORVU S-adenosylmethionine synthetase 1 OS=Hordeum
           vulgare GN=SAM1 PE=2 SV=1
          Length = 394

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEKA 54
           DDADFTWE VKPLKF+KA
Sbjct: 375 DDADFTWEVVKPLKFDKA 392


>sp|Q6F3F1|METK4_ATRNU S-adenosylmethionine synthetase 4 OS=Atriplex
           nummularia GN=SAMS4 PE=1 SV=1
          Length = 396

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEK 51
           DDADFTWETVKPLK+EK
Sbjct: 377 DDADFTWETVKPLKWEK 393


>sp|Q6F3F0|METK3_ATRNU S-adenosylmethionine synthetase 3 OS=Atriplex
           nummularia GN=SAMS3 PE=1 SV=1
          Length = 396

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEK 51
           DDADFTWETVKPLK+EK
Sbjct: 377 DDADFTWETVKPLKWEK 393


>sp|Q6F3F3|METK2_ATRNU S-adenosylmethionine synthetase 2 OS=Atriplex
           nummularia GN=SAMS2 PE=1 SV=1
          Length = 396

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEK 51
           DDADFTWETVKPLK+EK
Sbjct: 377 DDADFTWETVKPLKWEK 393


>sp|Q7XZR1|METK1_ATRNU S-adenosylmethionine synthetase 1 OS=Atriplex
           nummularia GN=SAMS1 PE=1 SV=2
          Length = 396

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEK 51
           DDADFTWETVKPLK+EK
Sbjct: 377 DDADFTWETVKPLKWEK 393


>sp|P50300|METK_PINBN S-adenosylmethionine synthetase OS=Pinus
           banksiana GN=METK PE=2 SV=1
          Length = 393

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEKA 54
           DD DFTWETVKPLK+EKA
Sbjct: 374 DDPDFTWETVKPLKWEKA 391


>sp|Q9FVG7|METK2_PINCO S-adenosylmethionine synthetase 2 OS=Pinus
           contorta GN=SAMS2 PE=2 SV=1
          Length = 393

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEKA 54
           DD DFTWETVKPLK+EKA
Sbjct: 374 DDPDFTWETVKPLKWEKA 391


>sp|A6XMY9|METK1_TRIMO S-adenosylmethionine synthetase 1 OS=Triticum
           monococcum GN=SAMS1 PE=2 SV=1
          Length = 394

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEKA 54
           +DADFTWE VKPLKF+KA
Sbjct: 375 EDADFTWEVVKPLKFDKA 392
tr_hit_id A6XMZ0
Definition tr|A6XMZ0|A6XMZ0_TRIMO S-adenosylmethionine synthetase (Fragment) OS=Triticum monococcum
Align length 18
Score (bit) 39.7
E-value 0.077
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947935|Adiantum capillus-veneris mRNA, clone:
YMU02A02NGRM0001_G12, 5'
         (211 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6XMZ0|A6XMZ0_TRIMO S-adenosylmethionine synthetase (Fragment...    40   0.077
tr|Q5UN16|Q5UN16_PINTA S-adenosyl methionine synthetase 2 (Fragm...    39   0.13 
tr|Q5EK82|Q5EK82_PINTA S-adenosyl methionine synthetase 2 (Fragm...    39   0.13 
tr|B0ZRG4|B0ZRG4_PINEL S-adenosyl methionine synthase protein 2 ...    39   0.13 
tr|B0ZRG3|B0ZRG3_PINSY S-adenosyl methionine synthase protein 2 ...    39   0.13 
tr|B0ZRG2|B0ZRG2_PINSY S-adenosyl methionine synthase protein 2 ...    39   0.13 
tr|B0ZRG0|B0ZRG0_PINRA S-adenosyl methionine synthase protein 2 ...    39   0.13 
tr|B8LNX2|B8LNX2_PICSI Putative uncharacterized protein OS=Picea...    38   0.29 
tr|Q6J9X6|Q6J9X6_MEDSA S-adenosylmethionine synthetase (Fragment...    37   0.38 
tr|A2ZSI2|A2ZSI2_ORYSJ Putative uncharacterized protein OS=Oryza...    36   0.86 
tr|A2WP83|A2WP83_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.86 
tr|Q9SAN9|Q9SAN9_CATRO Methionine adenosyltransferase (Fragment)...    36   1.1  
tr|Q1H9D3|Q1H9D3_ORYSA S-adenosylmethionine synthetase (Fragment...    35   1.5  
tr|Q1H9D0|Q1H9D0_ORYSA S-adenosylmethionine synthetase (Fragment...    35   1.5  
tr|Q1H9C8|Q1H9C8_ORYSA S-adenosylmethionine synthetase (Fragment...    35   1.5  
tr|Q1H9C4|Q1H9C4_ORYSA S-adenosylmethionine synthetase (Fragment...    35   1.5  
tr|Q1H9C0|Q1H9C0_ORYSA S-adenosylmethionine synthetase (Fragment...    35   1.5  
tr|Q1H9B9|Q1H9B9_ORYSA S-adenosylmethionine synthetase (Fragment...    35   1.5  
tr|Q1H9B6|Q1H9B6_ORYRU S-adenosylmethionine synthetase (Fragment...    35   1.5  
tr|Q1H9B3|Q1H9B3_ORYRU S-adenosylmethionine synthetase (Fragment...    35   1.5  
tr|Q1H9A4|Q1H9A4_ORYRU S-adenosylmethionine synthetase (Fragment...    35   1.5  
tr|Q1H9A2|Q1H9A2_ORYRU S-adenosylmethionine synthetase (Fragment...    35   1.5  
tr|Q1H997|Q1H997_ORYRU S-adenosylmethionine synthetase (Fragment...    35   1.5  
tr|Q1H994|Q1H994_ORYRU S-adenosylmethionine synthetase (Fragment...    35   1.5  
tr|Q1H993|Q1H993_ORYRU S-adenosylmethionine synthetase (Fragment...    35   1.5  
tr|Q1H992|Q1H992_ORYRU S-adenosylmethionine synthetase (Fragment...    35   1.5  
tr|Q1H990|Q1H990_ORYRU S-adenosylmethionine synthetase (Fragment...    35   1.5  
tr|Q1H989|Q1H989_ORYRU S-adenosylmethionine synthetase (Fragment...    35   1.5  
tr|Q1H981|Q1H981_ORYRU S-adenosylmethionine synthetase (Fragment...    35   1.5  
tr|Q1H977|Q1H977_ORYRU S-adenosylmethionine synthetase (Fragment...    35   1.5  

>tr|A6XMZ0|A6XMZ0_TRIMO S-adenosylmethionine synthetase (Fragment)
           OS=Triticum monococcum PE=2 SV=1
          Length = 289

 Score = 39.7 bits (91), Expect = 0.077
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEKA 54
           DDADFTWE VKPLKF+KA
Sbjct: 270 DDADFTWEVVKPLKFDKA 287


>tr|Q5UN16|Q5UN16_PINTA S-adenosyl methionine synthetase 2
           (Fragment) OS=Pinus taeda PE=3 SV=1
          Length = 102

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEKA 54
           DD DFTWETVKPLK+EKA
Sbjct: 83  DDPDFTWETVKPLKWEKA 100


>tr|Q5EK82|Q5EK82_PINTA S-adenosyl methionine synthetase 2
           (Fragment) OS=Pinus taeda GN=sams-2 PE=3 SV=1
          Length = 115

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEKA 54
           DD DFTWETVKPLK+EKA
Sbjct: 96  DDPDFTWETVKPLKWEKA 113


>tr|B0ZRG4|B0ZRG4_PINEL S-adenosyl methionine synthase protein 2
           (Fragment) OS=Pinus elliottii GN=SAMS2 PE=3 SV=1
          Length = 111

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEKA 54
           DD DFTWETVKPLK+EKA
Sbjct: 92  DDPDFTWETVKPLKWEKA 109


>tr|B0ZRG3|B0ZRG3_PINSY S-adenosyl methionine synthase protein 2
           (Fragment) OS=Pinus sylvestris GN=SAMS2 PE=3 SV=1
          Length = 111

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEKA 54
           DD DFTWETVKPLK+EKA
Sbjct: 92  DDPDFTWETVKPLKWEKA 109


>tr|B0ZRG2|B0ZRG2_PINSY S-adenosyl methionine synthase protein 2
           (Fragment) OS=Pinus sylvestris GN=SAMS2 PE=3 SV=1
          Length = 111

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEKA 54
           DD DFTWETVKPLK+EKA
Sbjct: 92  DDPDFTWETVKPLKWEKA 109


>tr|B0ZRG0|B0ZRG0_PINRA S-adenosyl methionine synthase protein 2
           (Fragment) OS=Pinus radiata GN=SAMS2 PE=3 SV=1
          Length = 111

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEKA 54
           DD DFTWETVKPLK+EKA
Sbjct: 92  DDPDFTWETVKPLKWEKA 109


>tr|B8LNX2|B8LNX2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 393

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEKA 54
           DD DFTWETVKPLK++KA
Sbjct: 374 DDPDFTWETVKPLKWDKA 391


>tr|Q6J9X6|Q6J9X6_MEDSA S-adenosylmethionine synthetase (Fragment)
           OS=Medicago sativa PE=2 SV=1
          Length = 391

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEKA 54
           +DADFTWE VKPLK+EKA
Sbjct: 374 EDADFTWEVVKPLKWEKA 391


>tr|A2ZSI2|A2ZSI2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_001504 PE=3 SV=1
          Length = 379

 Score = 36.2 bits (82), Expect = 0.86
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +1

Query: 1   DDADFTWETVKPLKFEKA 54
           +D DFTWE VKPLK+EKA
Sbjct: 360 EDPDFTWEVVKPLKYEKA 377