NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947936
Clone id YMU02A02NGRM0001_H01
Library
Length 257
Definition Adiantum capillus-veneris mRNA. clone: YMU02A02NGRM0001_H01. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGTGAAACGGGAAGAGCCTAAACCGTGAAGACGGGGTTGTGGGAGAGTGACGAGGGCTTC
GTTTTACTAGGCGAAGCAGTTGAGTGTTGCACCCCAGATGGTGATAGTCCAGTAGCCGGA
AGTACAGCTAGCTCACGCTCCAACCCAAGTAGCATGGGGCACGCAAAATCCCGTGTGAAT
CAGCGAGGACCACCTTGTAAGGCTAAATATTCCTGAGTGACCGATAGCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q3SYW2
Definition sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus
Align length 40
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947936|Adiantum capillus-veneris mRNA, clone:
YMU02A02NGRM0001_H01, 5'
         (228 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1        30   3.8  
sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (str...    30   5.0  
sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (stra...    30   5.0  
sp|Q2NAZ6|EFP_ERYLH Elongation factor P OS=Erythrobacter litoral...    30   5.0  

>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
          Length = 750

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +1

Query: 40  WESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 147
           +E ++GF L G AV  C P    DG++ V  + AS   NP
Sbjct: 115 FECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154


>sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain
           AD169) GN=TRS1 PE=3 SV=1
          Length = 788

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 88  CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 195
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (strain
           AD169) GN=IRS1 PE=3 SV=1
          Length = 846

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 88  CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 195
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q2NAZ6|EFP_ERYLH Elongation factor P OS=Erythrobacter litoralis
           (strain HTCC2594) GN=efp PE=3 SV=1
          Length = 187

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 22  TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPS 150
           TV+  LWE     V L + VE    + D+ V G TASS   P+
Sbjct: 111 TVQLELWEEKPISVQLPQQVEADIVEADAVVKGQTASSSYKPA 153
tr_hit_id A6H5B3
Definition tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata
Align length 50
Score (bit) 82.8
E-value 8.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947936|Adiantum capillus-veneris mRNA, clone:
YMU02A02NGRM0001_H01, 5'
         (228 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    83   8e-15
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    83   8e-15
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    83   8e-15
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    83   8e-15
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag...    69   2e-10
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh...    64   3e-09
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who...    63   6e-09
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    45   3e-07
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1            52   1e-05
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote...    44   0.003
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo...    43   0.007
tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea...    43   0.007
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep...    43   0.009
tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep...    43   0.009
tr|B5H7Z0|B5H7Z0_STRPR Putative uncharacterized protein (Fragmen...    43   0.009
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep...    43   0.009
tr|B4V209|B4V209_9ACTO Putative uncharacterized protein (Fragmen...    43   0.009
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    42   0.012
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen...    42   0.020
tr|B5G7E5|B5G7E5_9ACTO Putative uncharacterized protein (Fragmen...    41   0.026
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri...    40   0.045
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri...    40   0.058
tr|B0NEX9|B0NEX9_EUBSP Putative uncharacterized protein OS=Clost...    39   0.099
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi...    39   0.13 
tr|A7B5W9|A7B5W9_RUMGN Putative uncharacterized protein OS=Rumin...    39   0.13 
tr|B0MI66|B0MI66_9FIRM Putative uncharacterized protein (Fragmen...    38   0.22 
tr|A7B6K6|A7B6K6_RUMGN Putative uncharacterized protein OS=Rumin...    38   0.29 
tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh...    37   0.49 
tr|A5ZI73|A5ZI73_9BACE Putative uncharacterized protein OS=Bacte...    37   0.64 
tr|A5ZTV7|A5ZTV7_9FIRM Putative uncharacterized protein OS=Rumin...    36   0.84 

>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 79

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 38/50 (76%), Positives = 43/50 (86%)
 Frame = +1

Query: 79  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDS 228
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDS
Sbjct: 23  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDS 72


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 87

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 38/50 (76%), Positives = 43/50 (86%)
 Frame = +1

Query: 79  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDS 228
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDS
Sbjct: 29  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDS 78


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 90

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 38/50 (76%), Positives = 43/50 (86%)
 Frame = +1

Query: 79  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDS 228
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDS
Sbjct: 32  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDS 81


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 85

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 38/50 (76%), Positives = 43/50 (86%)
 Frame = +1

Query: 79  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDS 228
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDS
Sbjct: 27  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDS 76


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
           (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
          Length = 52

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 32/43 (74%), Positives = 37/43 (86%)
 Frame = +1

Query: 100 GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDS 228
           G+SPV+ S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDS
Sbjct: 1   GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDS 43


>tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, whole
           genome shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00011927001 PE=4 SV=1
          Length = 60

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 33/59 (55%), Positives = 39/59 (66%)
 Frame = +1

Query: 10  GRA*TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 186
           G A  VKTGLWES++   LL EA ECCT DG+SPVA S  S  S+ SSMGH   +  +R
Sbjct: 2   GAAQIVKTGLWESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQSSMGHEMPKKEKR 60


>tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010999001 PE=4 SV=1
          Length = 73

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 32/59 (54%), Positives = 39/59 (66%)
 Frame = +1

Query: 10  GRA*TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 186
           G A  VKTGLWES++   LL EA ECCT DG+SPVA S  S  S+ +SMGH   +  +R
Sbjct: 2   GAAQIVKTGLWESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQNSMGHEMPKKEKR 60


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
           PE=4 SV=1
          Length = 390

 Score = 45.4 bits (106), Expect(2) = 3e-07
 Identities = 20/27 (74%), Positives = 21/27 (77%)
 Frame = -1

Query: 228 AIGHSGIFSLTRWSSLIHTGFCVPHAT 148
           AI H  +FSL RWS LIHTGF VPHAT
Sbjct: 246 AISHPEVFSLARWSLLIHTGFHVPHAT 272



 Score = 32.0 bits (71), Expect(2) = 3e-07
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -2

Query: 131 LAVLPATGLSPSGVQHXXXXXXXXXXXXXSHNPVFT 24
           L +L ATG SPS VQH             SHNP+FT
Sbjct: 274 LVMLSATGHSPSRVQHFAASPSNTMLVLLSHNPIFT 309


>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1
          Length = 44

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 24/31 (77%), Positives = 25/31 (80%)
 Frame = -1

Query: 228 AIGHSGIFSLTRWSSLIHTGFCVPHATWVGA 136
           AIGH G+FSL RWS LIHTGF VPHAT V A
Sbjct: 14  AIGHPGVFSLARWSLLIHTGFHVPHATRVRA 44


>tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprotein
           OS=Oryza sativa subsp. japonica GN=Os01g0790900 PE=3
           SV=1
          Length = 1546

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 19/23 (82%), Positives = 20/23 (86%)
 Frame = -1

Query: 216 SGIFSLTRWSSLIHTGFCVPHAT 148
           SG+FSL RWS LIHTGF VPHAT
Sbjct: 666 SGVFSLARWSLLIHTGFHVPHAT 688