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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952597
Clone id TST38A01NGRL0014_I12
Library
Length 371
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_I12. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
AAGTGACTCAAGTGAGGGTCAAGTTTGTCGATGACCAAAATCGTCTCATCATGAGAAATG
TGAAAGGTCCTGTCCGAGAAGGAGATATCCTAGCTCTTTTGGAGTCTGAGAGAGAGGCTC
GAAGACTTCGATAGCTGTGGTGGTTTTTTGATGGTTCGAATGGGCTATTGTCATGGATCA
TAAGTTGGAAAAGCATTTTGGAGAGTACGGCCGGTTATAGGATGATAGGCTTGCTGTTTT
GGCAACAACTTAATCATGTTTTTGACAATGCGGCATGTGCTTCTATGTAACATGAGTTTT
TCAGATTGATGAGAATCAAGTATTGTTTTTAGTATTTCCTTATTTGACACTTGTATTCAG
AGTTTTTTTTG
■■Homology search results ■■ -
sp_hit_id P46302
Definition sp|P46302|RS28_MAIZE 40S ribosomal protein S28 OS=Zea mays
Align length 29
Score (bit) 56.6
E-value 4.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952597|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_I12, 5'
         (371 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46302|RS28_MAIZE 40S ribosomal protein S28 OS=Zea mays GN=RP...    57   4e-08
sp|Q90YP3|RS28_ICTPU 40S ribosomal protein S28 OS=Ictalurus punc...    50   3e-06
sp|Q6PBK3|RS28_DANRE 40S ribosomal protein S28 OS=Danio rerio GN...    50   3e-06
sp|Q7S6W5|RS28_NEUCR 40S ribosomal protein S28 OS=Neurospora cra...    49   6e-06
sp|P33286|RS28_KLUMA 40S ribosomal protein S28 OS=Kluyveromyces ...    49   1e-05
sp|P33285|RS28_KLULA 40S ribosomal protein S28 OS=Kluyveromyces ...    49   1e-05
sp|P62859|RS28_RAT 40S ribosomal protein S28 OS=Rattus norvegicu...    48   1e-05
sp|Q6QAT1|RS28_PIG 40S ribosomal protein S28 OS=Sus scrofa GN=RP...    48   1e-05
sp|P62858|RS28_MOUSE 40S ribosomal protein S28 OS=Mus musculus G...    48   1e-05
sp|P62857|RS28_HUMAN 40S ribosomal protein S28 OS=Homo sapiens G...    48   1e-05
sp|Q56JX6|RS28_BOVIN 40S ribosomal protein S28 OS=Bos taurus GN=...    48   1e-05
sp|Q74ZD8|RS28_ASHGO 40S ribosomal protein S28 OS=Ashbya gossypi...    48   1e-05
sp|Q10421|RS28_SCHPO 40S ribosomal protein S28 OS=Schizosaccharo...    47   2e-05
sp|Q9W334|RS28_DROME 40S ribosomal protein S28 OS=Drosophila mel...    47   2e-05
sp|Q95Y04|RS28_CAEEL 40S ribosomal protein S28 OS=Caenorhabditis...    47   3e-05
sp|Q6FLC3|RS28_CANGA 40S ribosomal protein S28 OS=Candida glabra...    47   4e-05
sp|P0C0X0|RS28B_YEAST 40S ribosomal protein S28-B OS=Saccharomyc...    47   4e-05
sp|Q3E7X9|RS28A_YEAST 40S ribosomal protein S28-A OS=Saccharomyc...    47   4e-05
sp|P34789|RS282_ARATH 40S ribosomal protein S28-2 OS=Arabidopsis...    47   4e-05
sp|Q9SR73|RS281_ARATH 40S ribosomal protein S28-1 OS=Arabidopsis...    47   4e-05
sp|O61590|RS28_OSTOS 40S ribosomal protein S28 OS=Ostertagia ost...    45   9e-05
sp|Q962Q2|RS28_SPOFR 40S ribosomal protein S28 OS=Spodoptera fru...    43   6e-04
sp|Q6EV21|RS28_PAPDA 40S ribosomal protein S28 OS=Papilio dardan...    43   6e-04
sp|Q6PS50|RS28_BOMMO 40S ribosomal protein S28 OS=Bombyx mori GN...    43   6e-04
sp|Q8TVE7|RS28_METKA 30S ribosomal protein S28e OS=Methanopyrus ...    42   0.001
sp|Q980Q5|RS28_SULSO 30S ribosomal protein S28e OS=Sulfolobus so...    39   0.008
sp|Q975Z8|RS28_SULTO 30S ribosomal protein S28e OS=Sulfolobus to...    39   0.010
sp|Q4JAV1|RS28_SULAC 30S ribosomal protein S28e OS=Sulfolobus ac...    39   0.010
sp|Q5JGR4|RS28_PYRKO 30S ribosomal protein S28e OS=Pyrococcus ko...    39   0.010
sp|Q8ZTA7|RS28_PYRAE 30S ribosomal protein S28e OS=Pyrobaculum a...    38   0.014

>sp|P46302|RS28_MAIZE 40S ribosomal protein S28 OS=Zea mays GN=RPS28
           PE=3 SV=1
          Length = 65

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +3

Query: 3   VTQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           VTQVRVKF+DDQNRLIMRNVKGPV EGDI
Sbjct: 23  VTQVRVKFLDDQNRLIMRNVKGPVCEGDI 51


>sp|Q90YP3|RS28_ICTPU 40S ribosomal protein S28 OS=Ictalurus
           punctatus GN=rps28 PE=3 SV=1
          Length = 69

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 22/28 (78%), Positives = 26/28 (92%)
 Frame = +3

Query: 6   TQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           TQVRV+F+DD NR I+RNVKGPVREGD+
Sbjct: 28  TQVRVEFMDDSNRSIIRNVKGPVREGDV 55


>sp|Q6PBK3|RS28_DANRE 40S ribosomal protein S28 OS=Danio rerio
           GN=rps28 PE=3 SV=1
          Length = 69

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 22/28 (78%), Positives = 26/28 (92%)
 Frame = +3

Query: 6   TQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           TQVRV+F+DD NR I+RNVKGPVREGD+
Sbjct: 28  TQVRVEFMDDSNRSIIRNVKGPVREGDV 55


>sp|Q7S6W5|RS28_NEUCR 40S ribosomal protein S28 OS=Neurospora crassa
           GN=rps-28 PE=3 SV=1
          Length = 68

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 23/29 (79%), Positives = 26/29 (89%)
 Frame = +3

Query: 3   VTQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           VTQVRV+F+DDQ R I+RNVKGPVRE DI
Sbjct: 26  VTQVRVEFMDDQTRSIIRNVKGPVREDDI 54


>sp|P33286|RS28_KLUMA 40S ribosomal protein S28 OS=Kluyveromyces
           marxianus GN=RPS28 PE=3 SV=1
          Length = 67

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 22/29 (75%), Positives = 26/29 (89%)
 Frame = +3

Query: 3   VTQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           VTQVRV+F++D  R I+RNVKGPVREGDI
Sbjct: 25  VTQVRVEFLEDTTRTIVRNVKGPVREGDI 53


>sp|P33285|RS28_KLULA 40S ribosomal protein S28 OS=Kluyveromyces
           lactis GN=RPS28 PE=3 SV=1
          Length = 67

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 22/29 (75%), Positives = 26/29 (89%)
 Frame = +3

Query: 3   VTQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           VTQVRV+F++D  R I+RNVKGPVREGDI
Sbjct: 25  VTQVRVEFLEDTTRTIVRNVKGPVREGDI 53


>sp|P62859|RS28_RAT 40S ribosomal protein S28 OS=Rattus norvegicus
           GN=Rps28 PE=1 SV=1
          Length = 69

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 21/28 (75%), Positives = 26/28 (92%)
 Frame = +3

Query: 6   TQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           TQVRV+F+DD +R I+RNVKGPVREGD+
Sbjct: 28  TQVRVEFMDDTSRSIIRNVKGPVREGDV 55


>sp|Q6QAT1|RS28_PIG 40S ribosomal protein S28 OS=Sus scrofa GN=RPS28
           PE=3 SV=2
          Length = 69

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 21/28 (75%), Positives = 26/28 (92%)
 Frame = +3

Query: 6   TQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           TQVRV+F+DD +R I+RNVKGPVREGD+
Sbjct: 28  TQVRVEFMDDTSRSIIRNVKGPVREGDV 55


>sp|P62858|RS28_MOUSE 40S ribosomal protein S28 OS=Mus musculus
           GN=Rps28 PE=2 SV=1
          Length = 69

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 21/28 (75%), Positives = 26/28 (92%)
 Frame = +3

Query: 6   TQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           TQVRV+F+DD +R I+RNVKGPVREGD+
Sbjct: 28  TQVRVEFMDDTSRSIIRNVKGPVREGDV 55


>sp|P62857|RS28_HUMAN 40S ribosomal protein S28 OS=Homo sapiens
           GN=RPS28 PE=1 SV=1
          Length = 69

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 21/28 (75%), Positives = 26/28 (92%)
 Frame = +3

Query: 6   TQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           TQVRV+F+DD +R I+RNVKGPVREGD+
Sbjct: 28  TQVRVEFMDDTSRSIIRNVKGPVREGDV 55
tr_hit_id Q7X9K4
Definition tr|Q7X9K4|Q7X9K4_WHEAT S28 ribosomal protein (Fragment) OS=Triticum aestivum
Align length 29
Score (bit) 59.7
E-value 7.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952597|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_I12, 5'
         (371 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7X9K4|Q7X9K4_WHEAT S28 ribosomal protein (Fragment) OS=Triti...    60   7e-08
tr|Q0IXR7|Q0IXR7_ORYSJ Os10g0411700 protein OS=Oryza sativa subs...    60   7e-08
tr|Q0DUU5|Q0DUU5_ORYSJ Os03g0167100 protein OS=Oryza sativa subs...    60   7e-08
tr|B8BGS7|B8BGS7_ORYSI Putative uncharacterized protein OS=Oryza...    60   7e-08
tr|B8APC5|B8APC5_ORYSI Putative uncharacterized protein OS=Oryza...    60   7e-08
tr|B6T1V2|B6T1V2_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=...    60   7e-08
tr|B4FW18|B4FW18_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=...    60   7e-08
tr|A9RXD9|A9RXD9_PHYPA Predicted protein OS=Physcomitrella paten...    60   7e-08
tr|A9RQ87|A9RQ87_PHYPA Predicted protein (Fragment) OS=Physcomit...    60   7e-08
tr|A8IKP1|A8IKP1_CHLRE Ribosomal protein S28 OS=Chlamydomonas re...    60   7e-08
tr|A3AEH6|A3AEH6_ORYSJ Putative uncharacterized protein OS=Oryza...    60   7e-08
tr|A9NJT8|A9NJT8_PICSI Putative uncharacterized protein OS=Picea...    59   9e-08
tr|A9P8N1|A9P8N1_POPTR Putative uncharacterized protein OS=Popul...    59   1e-07
tr|Q9ZNS5|Q9ZNS5_PRUPE Ribosomal protein S28 OS=Prunus persica G...    58   2e-07
tr|Q6RJY5|Q6RJY5_CAPAN 28 kDa small subunit ribosomal protein OS...    58   2e-07
tr|A7PW33|A7PW33_VITVI Chromosome chr8 scaffold_34, whole genome...    58   2e-07
tr|A5B3G5|A5B3G5_VITVI Putative uncharacterized protein (Fragmen...    58   2e-07
tr|Q8LK53|Q8LK53_HELAN Ribosomal protein small subunit 28 OS=Hel...    58   3e-07
tr|Q014Q6|Q014Q6_OSTTA S28 ribosomal protein (ISS) OS=Ostreococc...    57   3e-07
tr|A4RT38|A4RT38_OSTLU Ribosomal protein S28e OS=Ostreococcus lu...    57   3e-07
tr|Q2HWC2|Q2HWC2_MEDTR Ribosomal protein S28e OS=Medicago trunca...    57   5e-07
tr|O49872|O49872_HORVU RpS28 OS=Hordeum vulgare PE=4 SV=1              57   5e-07
tr|A7QHG6|A7QHG6_VITVI Chromosome chr2 scaffold_97, whole genome...    57   5e-07
tr|B6SP50|B6SP50_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=...    56   8e-07
tr|A5BBU2|A5BBU2_VITVI Putative uncharacterized protein (Fragmen...    56   8e-07
tr|Q9ZRW5|Q9ZRW5_PRUPE Ribosomal protein S28 OS=Prunus persica G...    55   1e-06
tr|A9P8H3|A9P8H3_POPTR Putative uncharacterized protein OS=Popul...    55   1e-06
tr|B6UEA6|B6UEA6_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=...    55   2e-06
tr|A8UET6|A8UET6_AREMA Ribosomal protein rps28 (Fragment) OS=Are...    53   7e-06
tr|A8E6C9|A8E6C9_9BILA Putative 40S ribosomal protein S28 isofor...    51   3e-05

>tr|Q7X9K4|Q7X9K4_WHEAT S28 ribosomal protein (Fragment) OS=Triticum
           aestivum PE=2 SV=1
          Length = 86

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 28/29 (96%), Positives = 29/29 (100%)
 Frame = +3

Query: 3   VTQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 44  VTQVRVKFLDDQNRLIMRNVKGPVREGDI 72


>tr|Q0IXR7|Q0IXR7_ORYSJ Os10g0411700 protein OS=Oryza sativa subsp.
           japonica GN=Os10g0411700 PE=4 SV=1
          Length = 65

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 28/29 (96%), Positives = 29/29 (100%)
 Frame = +3

Query: 3   VTQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 23  VTQVRVKFLDDQNRLIMRNVKGPVREGDI 51


>tr|Q0DUU5|Q0DUU5_ORYSJ Os03g0167100 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0167100 PE=4 SV=1
          Length = 106

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 28/29 (96%), Positives = 29/29 (100%)
 Frame = +3

Query: 3   VTQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 64  VTQVRVKFLDDQNRLIMRNVKGPVREGDI 92


>tr|B8BGS7|B8BGS7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_33537 PE=4 SV=1
          Length = 400

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 28/29 (96%), Positives = 29/29 (100%)
 Frame = +3

Query: 3   VTQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 358 VTQVRVKFLDDQNRLIMRNVKGPVREGDI 386


>tr|B8APC5|B8APC5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10164 PE=4 SV=1
          Length = 101

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 28/29 (96%), Positives = 29/29 (100%)
 Frame = +3

Query: 3   VTQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 59  VTQVRVKFLDDQNRLIMRNVKGPVREGDI 87


>tr|B6T1V2|B6T1V2_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=4
           SV=1
          Length = 65

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 28/29 (96%), Positives = 29/29 (100%)
 Frame = +3

Query: 3   VTQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 23  VTQVRVKFLDDQNRLIMRNVKGPVREGDI 51


>tr|B4FW18|B4FW18_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=4
           SV=1
          Length = 65

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 28/29 (96%), Positives = 29/29 (100%)
 Frame = +3

Query: 3   VTQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 23  VTQVRVKFLDDQNRLIMRNVKGPVREGDI 51


>tr|A9RXD9|A9RXD9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_198079 PE=4 SV=1
          Length = 65

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 28/29 (96%), Positives = 29/29 (100%)
 Frame = +3

Query: 3   VTQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 23  VTQVRVKFLDDQNRLIMRNVKGPVREGDI 51


>tr|A9RQ87|A9RQ87_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_117626 PE=4 SV=1
          Length = 65

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 28/29 (96%), Positives = 29/29 (100%)
 Frame = +3

Query: 3   VTQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 23  VTQVRVKFLDDQNRLIMRNVKGPVREGDI 51


>tr|A8IKP1|A8IKP1_CHLRE Ribosomal protein S28 OS=Chlamydomonas
           reinhardtii GN=RPS28 PE=4 SV=1
          Length = 65

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 28/29 (96%), Positives = 29/29 (100%)
 Frame = +3

Query: 3   VTQVRVKFVDDQNRLIMRNVKGPVREGDI 89
           VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 23  VTQVRVKFLDDQNRLIMRNVKGPVREGDI 51