NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957128
Clone id TST39A01NGRL0027_I21
Library
Length 592
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_I21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CACGCACAGAAGGTGGTAAAGTGGAAAGTTTTCAAGCTTTCCATAGCTTCATCTCGGCAG
AGCAGAGAATCCCTGCCTCTCAGCTGCCGTAGGGTAGCTCTTCGGTGCTCGCCATAGCTG
GTGCATCAGAAGATCGCACCCAACTCAAATTATCCCGGGACAGCTGCTATATCAAGGGCT
TTCTCAGCGAATTGAGGGCATGGAGAGCTCCCCTGGAGCGGCAGGCTGGGGAAACGTTCA
GGATTTGGGGATTTGTGGAGTGGTGAGGCAATCCATCTCCGTGCTTTGCACACGTGCGAA
GCTCTTTGCCGCCATCGCTCTCACCCTCACGCTCCCTCTCTGTTTCATCATTCTGGCGCA
CTACCTGGCCATAGATCCTCTTGTCTCGCGCATACGCAGATATGAAGAGAATCCTGTTGT
AGATTCATCCCTGCGCAGCCGCATCACAGCTGATCGCATCCGCCTGGGTCTTCTCTTGGC
TGCCTATGTTTTGCTTGTCCTCGCCTTCGCCCTTCTGTCAACCGCGGCTACTGTCTACAG
TGTTGCATGCATCTACACCAAGCGTCCACTCACTTTCAGGAAGGTTCTCTGT
■■Homology search results ■■ -
sp_hit_id Q25190
Definition sp|Q25190|5HTR_HELVI 5-hydroxytryptamine receptor OS=Heliothis virescens
Align length 32
Score (bit) 32.0
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957128|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_I21, 5'
         (579 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q25190|5HTR_HELVI 5-hydroxytryptamine receptor OS=Heliothis v...    32   2.3  
sp|Q3LXA7|RBR3_MAIZE Retinoblastoma-related protein 3 OS=Zea may...    31   3.9  
sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1 ...    30   6.7  
sp|Q1W617|SHRM4_MOUSE Protein Shroom4 OS=Mus musculus GN=Shroom4...    30   6.7  
sp|Q9USS2|PPK29_SCHPO Serine/threonine-protein kinase ppk29 OS=S...    30   8.7  
sp|P42291|DRD1C_XENLA D(1C) dopamine receptor OS=Xenopus laevis ...    30   8.7  

>sp|Q25190|5HTR_HELVI 5-hydroxytryptamine receptor OS=Heliothis
           virescens PE=2 SV=1
          Length = 466

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 437 LIASAWVFSWLPMFCLSSPSPFCQPRLLSTVL 532
           +I  A+VF WLP F ++   P CQ  ++S  L
Sbjct: 389 IITGAFVFCWLPFFIMALVMPICQTCVISDYL 420


>sp|Q3LXA7|RBR3_MAIZE Retinoblastoma-related protein 3 OS=Zea mays
           GN=RBR3 PE=2 SV=1
          Length = 1010

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 26/86 (30%), Positives = 42/86 (48%)
 Frame = -3

Query: 265 RWIASPLHKSPNPERFPSLPLQGSSPCPQFAEKALDIAAVPG*FELGAIF*CTSYGEHRR 86
           +W+ + +  SP P R     L+  S C +  +   DIA   G   LGAIF  +S+GE   
Sbjct: 426 KWLRNTV--SPLPSRPSGELLRFFSACDK--DLTDDIAHRAG-IILGAIFTSSSFGERIC 480

Query: 85  ATLRQLRGRDSLLCRDEAMESLKTFH 8
            ++R     D++      ME+LK ++
Sbjct: 481 TSMRSASRMDAIWTEQRKMEALKLYY 506


>sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1
            OS=Homo sapiens GN=POLR1A PE=1 SV=2
          Length = 1720

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 22/87 (25%), Positives = 38/87 (43%)
 Frame = -1

Query: 543  VDACNTVDSSRG*QKGEGEDKQNIGSQEKTQADAISCDAAAQG*IYNRILFISAYARDKR 364
            +D    +  SRG Q+G+ E++ +I   E  + DA + D                 A+ K 
Sbjct: 1377 LDNAGELGRSRGEQEGDEEEEGHIVDAEAEEGDADASD-----------------AKRKE 1419

Query: 363  IYGQVVRQNDETEREREGESDGGKELR 283
               + V    E E EREGE +  ++++
Sbjct: 1420 KQEEEVDYESEEEEEREGEENDDEDMQ 1446


>sp|Q1W617|SHRM4_MOUSE Protein Shroom4 OS=Mus musculus GN=Shroom4
           PE=1 SV=1
          Length = 1475

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 265 RWIASPLHKSPNPERFPSLPLQGS 194
           +W  SPLH +P  ++ PSLP  G+
Sbjct: 445 QWTVSPLHNNPKGKKSPSLPTGGT 468


>sp|Q9USS2|PPK29_SCHPO Serine/threonine-protein kinase ppk29
           OS=Schizosaccharomyces pombe GN=ppk29 PE=1 SV=1
          Length = 872

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 488 SPSPFCQPRLLSTVLHASTPSVHSLSGRFS 577
           SP+PF QP    T   ++ PS+HS S  F+
Sbjct: 379 SPNPFLQPTFSGTSQASAHPSIHSQSATFN 408


>sp|P42291|DRD1C_XENLA D(1C) dopamine receptor OS=Xenopus laevis
           PE=2 SV=1
          Length = 465

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 437 LIASAWVFSWLPMFCLSSPSPFCQPRL 517
           +I   +VF WLP F L+   PFC   L
Sbjct: 268 IIMGVFVFCWLPFFVLNCMIPFCHMNL 294
tr_hit_id B8LL32
Definition tr|B8LL32|B8LL32_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 125
Score (bit) 64.7
E-value 4.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957128|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_I21, 5'
         (579 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LL32|B8LL32_PICSI Putative uncharacterized protein OS=Picea...    65   4e-09
tr|A9S7R2|A9S7R2_PHYPA Predicted protein OS=Physcomitrella paten...    61   5e-08
tr|A9P252|A9P252_PICSI Putative uncharacterized protein OS=Picea...    55   3e-06
tr|A7R3G0|A7R3G0_VITVI Chromosome chr4 scaffold_519, whole genom...    55   3e-06
tr|A7NSM6|A7NSM6_VITVI Chromosome chr18 scaffold_1, whole genome...    52   2e-05
tr|A9TK92|A9TK92_PHYPA Predicted protein OS=Physcomitrella paten...    50   9e-05
tr|A9SQ84|A9SQ84_PHYPA Predicted protein OS=Physcomitrella paten...    49   2e-04
tr|A2Q573|A2Q573_MEDTR Putative uncharacterized protein OS=Medic...    49   3e-04
tr|A9TM42|A9TM42_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|A5BKV6|A5BKV6_VITVI Putative uncharacterized protein OS=Vitis...    45   0.003
tr|Q6DBH7|Q6DBH7_ARATH At4g19950 OS=Arabidopsis thaliana GN=At4g...    44   0.009
tr|O49422|O49422_ARATH Putative uncharacterized protein AT4g1995...    44   0.009
tr|O48574|O48574_ARATH T19K24.3 protein (Putative uncharacterize...    42   0.019
tr|A7P2Q2|A7P2Q2_VITVI Chromosome chr1 scaffold_5, whole genome ...    40   0.094
tr|Q6ZD72|Q6ZD72_ORYSJ Os08g0107100 protein OS=Oryza sativa subs...    38   0.36 
tr|B8BA37|B8BA37_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.47 
tr|A3BNW3|A3BNW3_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.61 
tr|Q9SA06|Q9SA06_ARATH F28K20.6 protein (Putative uncharacterize...    37   0.80 
tr|B6TWG7|B6TWG7_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.80 
tr|A1K9G0|A1K9G0_AZOSB Conserved hypothetical membrane protein O...    37   1.0  
tr|B6TI24|B6TI24_MAIZE Putative uncharacterized protein OS=Zea m...    35   3.0  
tr|Q26G96|Q26G96_9BACT Ribonucleoside-diphosphate reductase smal...    35   3.9  
tr|B6XRM0|B6XRM0_9BIFI Putative uncharacterized protein OS=Bifid...    35   4.0  
tr|B4JUY5|B4JUY5_DROGR GH14802 OS=Drosophila grimshawi GN=GH1480...    35   4.0  
tr|A9UL13|A9UL13_WHEAT Retinoblastoma-related protein 1 OS=Triti...    34   5.1  
tr|Q8N9G7|Q8N9G7_HUMAN cDNA FLJ37163 fis, clone BRACE2026971 (HC...    34   5.1  
tr|A5C2G4|A5C2G4_VITVI Putative uncharacterized protein OS=Vitis...    34   5.2  
tr|B6XVB6|B6XVB6_9BIFI Putative uncharacterized protein OS=Bifid...    34   6.8  
tr|B4QJR8|B4QJR8_DROSI GD14954 OS=Drosophila simulans GN=GD14954...    33   8.8  
tr|B4IAN6|B4IAN6_DROSE GM22362 OS=Drosophila sechellia GN=GM2236...    33   8.8  

>tr|B8LL32|B8LL32_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 335

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
 Frame = +1

Query: 223 VQDLGICGVVRQSISVLCTRAKLFAAIALTLTLPLCFIILAHYLAIDPLVSRIRRYEE-- 396
           +Q LG+ G++ ++I +L +  K   AI LTL LPL F IL H L  DPL+ +I R E+  
Sbjct: 9   LQFLGVVGILAEAIKILRSCVKQLGAITLTLILPLSFAILGHTLVSDPLIHKIERNEDTF 68

Query: 397 -----NPVVDSSLRSRITADRIRXXXXXXXXXXXXXXXXXXXXXXTVYSVACIYTKRPLT 561
                +P  D ++ + I ++  R                       VY+VACIYT + +T
Sbjct: 69  EKQAGSPDADRTM-ALIYSEWTRFLLFQGGYLVFLLAFSLLSTAAVVYTVACIYTGKQIT 127

Query: 562 FRKVL 576
           + KV+
Sbjct: 128 YAKVM 132


>tr|A9S7R2|A9S7R2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_105931 PE=4 SV=1
          Length = 338

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
 Frame = +1

Query: 223 VQDLGICGVVRQSISVLCTRAKLFAAIALTLTLPLCFIILAHYLAIDPLVSRIRRYE--- 393
           ++ LG+ G+ ++  ++L +  +LF ++A TL LPL  +I  H L  DPL+++I R E   
Sbjct: 8   MRSLGVVGICKEVFNLLRSHLRLFVSLAFTLVLPLGLVIFCHTLVSDPLMNKIGRNENEK 67

Query: 394 --ENPVVDSSLR--SRITADRIRXXXXXXXXXXXXXXXXXXXXXXTVYSVACIYTKRPLT 561
             E P   +++R  +R+ A+                          VYSVACIYT + L+
Sbjct: 68  ATEIPGSPAAVRTQNRLDAEFFALAIITILYFVFVLAFSLLSTAAIVYSVACIYTAKGLS 127

Query: 562 FRKVL 576
           + KV+
Sbjct: 128 YAKVI 132


>tr|A9P252|A9P252_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 344

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
 Frame = +1

Query: 220 NVQDLGICGVVRQSISVLCTRAKLFAAIALTLTLPLCFIILAHYLAIDPLVSRIR----- 384
           ++Q LGI G++  +  +L + AKL  ++ LTL LPLCF IL H L  + L+ +I      
Sbjct: 7   DLQFLGIVGIIGSAFKILRSCAKLLGSLTLTLILPLCFAILGHQLVSEYLLYKIHWNEMF 66

Query: 385 -RYEENPVVDSSLRSRITADRIRXXXXXXXXXXXXXXXXXXXXXXTVYSVACIYTKRPLT 561
            + E        +   +T +R                         VY+VA IYT + ++
Sbjct: 67  YQVENGTPAGERIMKELTWERTELFIFQAAYLLFVLVFSLLSTAAVVYTVASIYTGKEIS 126

Query: 562 FRKVL 576
           + +V+
Sbjct: 127 YARVM 131


>tr|A7R3G0|A7R3G0_VITVI Chromosome chr4 scaffold_519, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00013642001
           PE=4 SV=1
          Length = 317

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 34/118 (28%), Positives = 60/118 (50%)
 Frame = +1

Query: 223 VQDLGICGVVRQSISVLCTRAKLFAAIALTLTLPLCFIILAHYLAIDPLVSRIRRYEENP 402
           +Q LG  G++++S+ ++ +  K+F+ I L L LPL FI LAH + +D   +   +YE+  
Sbjct: 8   LQFLGFFGIIKESVKIIYSWRKIFSQITLALILPLTFIFLAH-IELDRTRAGTPKYEK-- 64

Query: 403 VVDSSLRSRITADRIRXXXXXXXXXXXXXXXXXXXXXXTVYSVACIYTKRPLTFRKVL 576
                L   I+++ I                        VY+VAC+Y+ + +TF++VL
Sbjct: 65  -----LSDVISSEWIVFWLLKVAYFTFLLIFSLLCTSAVVYAVACVYSAKQITFKRVL 117


>tr|A7NSM6|A7NSM6_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014321001
           PE=4 SV=1
          Length = 334

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
 Frame = +1

Query: 232 LGICGVVRQSISVLCTRAKLFAAIALTLTLPLCFIILAHYLAIDPLVSRIRRYEENPVVD 411
           LG+ G+ R++  ++ +  K+F  I L   LPL FI LAH    D L++ I   E N V  
Sbjct: 11  LGVVGIYREAYKIIFSWRKIFTQITLAFILPLSFIFLAHIEVSDYLLANIIDNENNLVET 70

Query: 412 -------SSLRSRITADRIRXXXXXXXXXXXXXXXXXXXXXXTVYSVACIYTKRPLTFRK 570
                  + +   + ++ +                        VY++ACIYT + +TF K
Sbjct: 71  QIGTLKYNKIAHLLFSELVTLCLFKAAYLLFTLIFSLLSTSAVVYTIACIYTGQKVTFTK 130

Query: 571 VL 576
           VL
Sbjct: 131 VL 132


>tr|A9TK92|A9TK92_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_146825 PE=4 SV=1
          Length = 320

 Score = 50.1 bits (118), Expect = 9e-05
 Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
 Frame = +1

Query: 217 GNVQDLGICGVV---RQSISVLCTRAKLFAAIALTLTLPLCFIILAHYLAIDPLVSRIRR 387
           G+ +D+G  GVV    +++ +L +  + F ++A TL LPL  ++L+     DPL+ ++ +
Sbjct: 3   GDPEDIGFAGVVGICSEAVKILRSYTRHFLSMAGTLVLPLGVVLLSQSFVSDPLLRKLTQ 62

Query: 388 YEENPVVDSSLRSRITADRIRXXXXXXXXXXXXXXXXXXXXXXTVYSVACIYTKRPLTFR 567
              N         R+ A+ +                        VYSVACIYT + L++ 
Sbjct: 63  MGRN-------NQRLDAEFVGLYLIAVLYLVFVLALSLFATAAIVYSVACIYTGKGLSYM 115

Query: 568 KVL 576
           KV+
Sbjct: 116 KVI 118


>tr|A9SQ84|A9SQ84_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_214634 PE=4 SV=1
          Length = 338

 Score = 48.9 bits (115), Expect = 2e-04
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
 Frame = +1

Query: 223 VQDLGICGVVRQSISVLCTRAKLFAAIALTLTLPLCFIILAHYLAIDPLVSRIR------ 384
           ++ LG+ G+ +++ ++L    +LF ++ALTL LPL  +I  H L   PL  +I       
Sbjct: 8   MRSLGVVGICKEAYNILQLHLRLFFSLALTLVLPLGAVIFCHDLITHPLWRKIHWDSNEL 67

Query: 385 -RYEENPVVDSSLRSRITADRIRXXXXXXXXXXXXXXXXXXXXXXTVYSVACIYTKRPLT 561
              +      +  +SR+ A+                          VYSVA IYT + L+
Sbjct: 68  DMEQAGSAARAQTQSRLDAELFGLGVITVVYVIFVLAFSLLSTAAIVYSVASIYTGKGLS 127

Query: 562 FRKVL 576
           + KV+
Sbjct: 128 YLKVI 132


>tr|A2Q573|A2Q573_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula GN=MtrDRAFT_AC160516g6v2 PE=2 SV=1
          Length = 320

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 35/118 (29%), Positives = 53/118 (44%)
 Frame = +1

Query: 223 VQDLGICGVVRQSISVLCTRAKLFAAIALTLTLPLCFIILAHYLAIDPLVSRIRRYEENP 402
           +Q L I  ++++SIS+     K F  I LTL  PL F ILAH L   PL+S++    ++P
Sbjct: 8   LQFLNIPNILKESISIPKISPKTFYLITLTLIFPLSFAILAHSLFTHPLISQL----QSP 63

Query: 403 VVDSSLRSRITADRIRXXXXXXXXXXXXXXXXXXXXXXTVYSVACIYTKRPLTFRKVL 576
             D S  S    D                          V++VA +YT +P++F   +
Sbjct: 64  FTDPSQTSH---DWTLLLIIQFFYLIFLFAFSLLSTAAVVFTVASLYTSKPVSFSNTI 118


>tr|A9TM42|A9TM42_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_196328 PE=4 SV=1
          Length = 339

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 7/137 (5%)
 Frame = +1

Query: 187 MESSPGAAGWGNVQDLGICGVVRQSISVLCTRAKLFAAIALTLTLPLCFIILAHYLAIDP 366
           M+S P       ++ LG+ G+ +++ ++L    +LF +++LTL LPL  +I  H L   P
Sbjct: 2   MDSEPD-----EMRSLGVVGICKEAYNILQVHLRLFLSLSLTLVLPLGAVIFCHDLITHP 56

Query: 367 LVSRIRRYEE-------NPVVDSSLRSRITADRIRXXXXXXXXXXXXXXXXXXXXXXTVY 525
           L  +I    E            +  +S + ++                          VY
Sbjct: 57  LWRKIHWDSEKLGTEQMGSAARAQTQSSLDSELFGLGVITVIYVIFILAFSLLSTAAIVY 116

Query: 526 SVACIYTKRPLTFRKVL 576
           SVA IYT + L++ KV+
Sbjct: 117 SVASIYTGKGLSYVKVI 133


>tr|A5BKV6|A5BKV6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_042682 PE=4 SV=1
          Length = 334

 Score = 45.1 bits (105), Expect = 0.003
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 7/125 (5%)
 Frame = +1

Query: 223 VQDLGICGVVRQSISVLCTRAKLFAAIALTLTLPLCFIILAHYLAIDPLVSRIRRYEENP 402
           ++ LG+ G+ R++   + +  K+F  I L   LPL FI LAH    D L++ I   E N 
Sbjct: 8   MKXLGVVGIYREAYKXIFSWRKIFTHITLAFILPLSFIFLAHIEVSDYLLANIIDNENNL 67

Query: 403 VVD-------SSLRSRITADRIRXXXXXXXXXXXXXXXXXXXXXXTVYSVACIYTKRPLT 561
           V         + +   + +                           VY++ACIY  + +T
Sbjct: 68  VETQIGTLKYNKISHLLFSKYAXLCLFKAAYLLFTLIFSLLSTSAXVYTIACIYXGQKVT 127

Query: 562 FRKVL 576
           F KVL
Sbjct: 128 FTKVL 132