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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957715
Clone id TST39A01NGRL0029_B14
Library
Length 467
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_B14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCCTAGCGTTGCTAAATCTCGCGCTCGCGCTCTGCTACCGGGCCTCCAGATATGGCATTC
GCCTGTTAAGCTTGCCATTTGTGGTGAAAGTCATGGGGCGGACTGGCCTCCGTTTTACCG
TGACACAAGTGAGGGTCAAGTTTGTCGATGACCAAAATCGTCTCATCATGAGAAATGTGA
AAGGTCCTGTCCGAGAAGGAGATATCCTAGCTCTTTTGGAGTCTGAGAGAGAGGCTCGAA
GACTTCGATAGCTGTGGTGGTTTTTTGATGGTTCGAATGGGCTATTGTCATGGATCATAA
GTTGGAAAAGCATTTTGGAGAGTACGGCCGGTTATAGGATGATAGGCTTGCTGTTTTGGC
AACAACTTAATCATGTTTTTGACAATGCGGCATGTGCTTCTATGTAACATGAGTTTTTCA
GATTGATGAGAATCAAGTATTGTTTTTAGTATTTCCTTATTTGACAC
■■Homology search results ■■ -
sp_hit_id P46302
Definition sp|P46302|RS28_MAIZE 40S ribosomal protein S28 OS=Zea mays
Align length 47
Score (bit) 74.3
E-value 2.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957715|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_B14, 5'
         (467 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46302|RS28_MAIZE 40S ribosomal protein S28 OS=Zea mays GN=RP...    74   2e-13
sp|P33286|RS28_KLUMA 40S ribosomal protein S28 OS=Kluyveromyces ...    64   3e-10
sp|P33285|RS28_KLULA 40S ribosomal protein S28 OS=Kluyveromyces ...    64   3e-10
sp|Q90YP3|RS28_ICTPU 40S ribosomal protein S28 OS=Ictalurus punc...    64   4e-10
sp|Q6PBK3|RS28_DANRE 40S ribosomal protein S28 OS=Danio rerio GN...    64   4e-10
sp|Q74ZD8|RS28_ASHGO 40S ribosomal protein S28 OS=Ashbya gossypi...    64   4e-10
sp|P34789|RS282_ARATH 40S ribosomal protein S28-2 OS=Arabidopsis...    63   6e-10
sp|Q9SR73|RS281_ARATH 40S ribosomal protein S28-1 OS=Arabidopsis...    63   6e-10
sp|Q10421|RS28_SCHPO 40S ribosomal protein S28 OS=Schizosaccharo...    62   9e-10
sp|Q6FLC3|RS28_CANGA 40S ribosomal protein S28 OS=Candida glabra...    62   1e-09
sp|P0C0X0|RS28B_YEAST 40S ribosomal protein S28-B OS=Saccharomyc...    62   1e-09
sp|Q3E7X9|RS28A_YEAST 40S ribosomal protein S28-A OS=Saccharomyc...    62   1e-09
sp|Q7S6W5|RS28_NEUCR 40S ribosomal protein S28 OS=Neurospora cra...    62   2e-09
sp|P62859|RS28_RAT 40S ribosomal protein S28 OS=Rattus norvegicu...    61   2e-09
sp|Q6QAT1|RS28_PIG 40S ribosomal protein S28 OS=Sus scrofa GN=RP...    61   2e-09
sp|P62858|RS28_MOUSE 40S ribosomal protein S28 OS=Mus musculus G...    61   2e-09
sp|P62857|RS28_HUMAN 40S ribosomal protein S28 OS=Homo sapiens G...    61   2e-09
sp|Q56JX6|RS28_BOVIN 40S ribosomal protein S28 OS=Bos taurus GN=...    61   2e-09
sp|Q95Y04|RS28_CAEEL 40S ribosomal protein S28 OS=Caenorhabditis...    60   4e-09
sp|Q9W334|RS28_DROME 40S ribosomal protein S28 OS=Drosophila mel...    60   6e-09
sp|Q962Q2|RS28_SPOFR 40S ribosomal protein S28 OS=Spodoptera fru...    56   7e-08
sp|Q6EV21|RS28_PAPDA 40S ribosomal protein S28 OS=Papilio dardan...    56   7e-08
sp|Q6PS50|RS28_BOMMO 40S ribosomal protein S28 OS=Bombyx mori GN...    56   7e-08
sp|O61590|RS28_OSTOS 40S ribosomal protein S28 OS=Ostertagia ost...    54   3e-07
sp|Q8TVE7|RS28_METKA 30S ribosomal protein S28e OS=Methanopyrus ...    54   3e-07
sp|Q8ZTA7|RS28_PYRAE 30S ribosomal protein S28e OS=Pyrobaculum a...    51   3e-06
sp|A1RXH2|RS28_THEPD 30S ribosomal protein S28e OS=Thermofilum p...    50   5e-06
sp|Q5JGR4|RS28_PYRKO 30S ribosomal protein S28e OS=Pyrococcus ko...    50   6e-06
sp|Q980Q5|RS28_SULSO 30S ribosomal protein S28e OS=Sulfolobus so...    48   2e-05
sp|P61030|RS28_PYRHO 30S ribosomal protein S28e OS=Pyrococcus ho...    48   2e-05

>sp|P46302|RS28_MAIZE 40S ribosomal protein S28 OS=Zea mays GN=RPS28
           PE=3 SV=1
          Length = 65

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 38/47 (80%), Positives = 40/47 (85%)
 Frame = +3

Query: 66  LSLPFVVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           + L  VVKVMGRTG R  VTQVRVKF+DDQNRLIMRNVKGPV EGDI
Sbjct: 5   VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDI 51


>sp|P33286|RS28_KLUMA 40S ribosomal protein S28 OS=Kluyveromyces
           marxianus GN=RPS28 PE=3 SV=1
          Length = 67

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 31/47 (65%), Positives = 39/47 (82%)
 Frame = +3

Query: 66  LSLPFVVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           ++L  V+KV+GRTG R  VTQVRV+F++D  R I+RNVKGPVREGDI
Sbjct: 7   VTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDI 53


>sp|P33285|RS28_KLULA 40S ribosomal protein S28 OS=Kluyveromyces
           lactis GN=RPS28 PE=3 SV=1
          Length = 67

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 31/47 (65%), Positives = 39/47 (82%)
 Frame = +3

Query: 66  LSLPFVVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           ++L  V+KV+GRTG R  VTQVRV+F++D  R I+RNVKGPVREGDI
Sbjct: 7   VTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDI 53


>sp|Q90YP3|RS28_ICTPU 40S ribosomal protein S28 OS=Ictalurus
           punctatus GN=rps28 PE=3 SV=1
          Length = 69

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 30/50 (60%), Positives = 39/50 (78%)
 Frame = +3

Query: 57  IRLLSLPFVVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           ++ + L  V KV+GRTG +   TQVRV+F+DD NR I+RNVKGPVREGD+
Sbjct: 6   VQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55


>sp|Q6PBK3|RS28_DANRE 40S ribosomal protein S28 OS=Danio rerio
           GN=rps28 PE=3 SV=1
          Length = 69

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 30/50 (60%), Positives = 39/50 (78%)
 Frame = +3

Query: 57  IRLLSLPFVVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           ++ + L  V KV+GRTG +   TQVRV+F+DD NR I+RNVKGPVREGD+
Sbjct: 6   VQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55


>sp|Q74ZD8|RS28_ASHGO 40S ribosomal protein S28 OS=Ashbya gossypii
           GN=RPS28A PE=3 SV=1
          Length = 67

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 31/47 (65%), Positives = 39/47 (82%)
 Frame = +3

Query: 66  LSLPFVVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           ++L  V+KV+GRTG R  VTQVRV+F+DD +R I+RNVKGPVRE DI
Sbjct: 7   VTLAKVIKVLGRTGSRGGVTQVRVEFLDDTSRTIVRNVKGPVRENDI 53


>sp|P34789|RS282_ARATH 40S ribosomal protein S28-2 OS=Arabidopsis
           thaliana GN=RPS28C PE=2 SV=1
          Length = 64

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 33/42 (78%), Positives = 35/42 (83%)
 Frame = +3

Query: 81  VVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           VVKVMGRTG R  VTQVRVKF  D +R IMRNVKGPVREGD+
Sbjct: 10  VVKVMGRTGSRGQVTQVRVKFT-DSDRFIMRNVKGPVREGDV 50


>sp|Q9SR73|RS281_ARATH 40S ribosomal protein S28-1 OS=Arabidopsis
           thaliana GN=RPS28A PE=2 SV=1
          Length = 64

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 34/42 (80%), Positives = 35/42 (83%)
 Frame = +3

Query: 81  VVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           VVKVMGRTG R  VTQVRVKF  D +R IMRNVKGPVREGDI
Sbjct: 10  VVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDI 50


>sp|Q10421|RS28_SCHPO 40S ribosomal protein S28
           OS=Schizosaccharomyces pombe GN=rps28a PE=2 SV=1
          Length = 68

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 31/47 (65%), Positives = 38/47 (80%)
 Frame = +3

Query: 66  LSLPFVVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           + L  V+KV+GRTG R  VTQVRV+F+DD +R I+RNVKGPVRE DI
Sbjct: 8   VKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDI 54


>sp|Q6FLC3|RS28_CANGA 40S ribosomal protein S28 OS=Candida glabrata
           GN=RPS28A PE=3 SV=1
          Length = 67

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 30/47 (63%), Positives = 39/47 (82%)
 Frame = +3

Query: 66  LSLPFVVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           ++L  V+KV+GRTG R  VTQVRV+F++D +R I+RNVKGPVRE DI
Sbjct: 7   VTLARVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDI 53
tr_hit_id Q7X9K4
Definition tr|Q7X9K4|Q7X9K4_WHEAT S28 ribosomal protein (Fragment) OS=Triticum aestivum
Align length 47
Score (bit) 77.4
E-value 3.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957715|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_B14, 5'
         (467 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7X9K4|Q7X9K4_WHEAT S28 ribosomal protein (Fragment) OS=Triti...    77   3e-13
tr|Q0IXR7|Q0IXR7_ORYSJ Os10g0411700 protein OS=Oryza sativa subs...    77   3e-13
tr|Q0DUU5|Q0DUU5_ORYSJ Os03g0167100 protein OS=Oryza sativa subs...    77   3e-13
tr|B8BGS7|B8BGS7_ORYSI Putative uncharacterized protein OS=Oryza...    77   3e-13
tr|B8APC5|B8APC5_ORYSI Putative uncharacterized protein OS=Oryza...    77   3e-13
tr|B6T1V2|B6T1V2_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=...    77   3e-13
tr|B4FW18|B4FW18_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=...    77   3e-13
tr|A3AEH6|A3AEH6_ORYSJ Putative uncharacterized protein OS=Oryza...    77   3e-13
tr|A9NJT8|A9NJT8_PICSI Putative uncharacterized protein OS=Picea...    75   1e-12
tr|A9RXD9|A9RXD9_PHYPA Predicted protein OS=Physcomitrella paten...    75   2e-12
tr|A9RQ87|A9RQ87_PHYPA Predicted protein (Fragment) OS=Physcomit...    75   2e-12
tr|A9P8N1|A9P8N1_POPTR Putative uncharacterized protein OS=Popul...    75   2e-12
tr|Q9ZNS5|Q9ZNS5_PRUPE Ribosomal protein S28 OS=Prunus persica G...    75   2e-12
tr|O49872|O49872_HORVU RpS28 OS=Hordeum vulgare PE=4 SV=1              75   2e-12
tr|A8IKP1|A8IKP1_CHLRE Ribosomal protein S28 OS=Chlamydomonas re...    75   2e-12
tr|A7PW33|A7PW33_VITVI Chromosome chr8 scaffold_34, whole genome...    75   2e-12
tr|A5B3G5|A5B3G5_VITVI Putative uncharacterized protein (Fragmen...    75   2e-12
tr|Q6RJY5|Q6RJY5_CAPAN 28 kDa small subunit ribosomal protein OS...    74   3e-12
tr|B6SP50|B6SP50_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=...    74   4e-12
tr|Q2HWC2|Q2HWC2_MEDTR Ribosomal protein S28e OS=Medicago trunca...    74   5e-12
tr|Q8LK53|Q8LK53_HELAN Ribosomal protein small subunit 28 OS=Hel...    73   8e-12
tr|Q014Q6|Q014Q6_OSTTA S28 ribosomal protein (ISS) OS=Ostreococc...    73   8e-12
tr|B6UEA6|B6UEA6_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=...    73   8e-12
tr|Q9ZRW5|Q9ZRW5_PRUPE Ribosomal protein S28 OS=Prunus persica G...    72   1e-11
tr|A7QHG6|A7QHG6_VITVI Chromosome chr2 scaffold_97, whole genome...    71   2e-11
tr|A4RT38|A4RT38_OSTLU Ribosomal protein S28e OS=Ostreococcus lu...    71   2e-11
tr|A9P8H3|A9P8H3_POPTR Putative uncharacterized protein OS=Popul...    70   4e-11
tr|A5BBU2|A5BBU2_VITVI Putative uncharacterized protein (Fragmen...    69   9e-11
tr|A8UET6|A8UET6_AREMA Ribosomal protein rps28 (Fragment) OS=Are...    66   1e-09
tr|B4PLQ8|B4PLQ8_DROYA GE23424 OS=Drosophila yakuba GN=GE23424 P...    65   2e-09

>tr|Q7X9K4|Q7X9K4_WHEAT S28 ribosomal protein (Fragment) OS=Triticum
           aestivum PE=2 SV=1
          Length = 86

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 39/47 (82%), Positives = 41/47 (87%)
 Frame = +3

Query: 66  LSLPFVVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           + L  VVKVMGRTG R  VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 26  VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 72


>tr|Q0IXR7|Q0IXR7_ORYSJ Os10g0411700 protein OS=Oryza sativa subsp.
           japonica GN=Os10g0411700 PE=4 SV=1
          Length = 65

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 39/47 (82%), Positives = 41/47 (87%)
 Frame = +3

Query: 66  LSLPFVVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           + L  VVKVMGRTG R  VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 5   VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51


>tr|Q0DUU5|Q0DUU5_ORYSJ Os03g0167100 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0167100 PE=4 SV=1
          Length = 106

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 39/47 (82%), Positives = 41/47 (87%)
 Frame = +3

Query: 66  LSLPFVVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           + L  VVKVMGRTG R  VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 46  VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 92


>tr|B8BGS7|B8BGS7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_33537 PE=4 SV=1
          Length = 400

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 39/47 (82%), Positives = 41/47 (87%)
 Frame = +3

Query: 66  LSLPFVVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           + L  VVKVMGRTG R  VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 340 VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 386


>tr|B8APC5|B8APC5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10164 PE=4 SV=1
          Length = 101

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 39/47 (82%), Positives = 41/47 (87%)
 Frame = +3

Query: 66  LSLPFVVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           + L  VVKVMGRTG R  VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 41  VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 87


>tr|B6T1V2|B6T1V2_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=4
           SV=1
          Length = 65

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 39/47 (82%), Positives = 41/47 (87%)
 Frame = +3

Query: 66  LSLPFVVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           + L  VVKVMGRTG R  VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 5   VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51


>tr|B4FW18|B4FW18_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=4
           SV=1
          Length = 65

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 39/47 (82%), Positives = 41/47 (87%)
 Frame = +3

Query: 66  LSLPFVVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           + L  VVKVMGRTG R  VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 5   VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51


>tr|A3AEH6|A3AEH6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_009198 PE=4 SV=1
          Length = 268

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 39/47 (82%), Positives = 41/47 (87%)
 Frame = +3

Query: 66  LSLPFVVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           + L  VVKVMGRTG R  VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 208 VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 254


>tr|A9NJT8|A9NJT8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 65

 Score = 75.5 bits (184), Expect = 1e-12
 Identities = 37/47 (78%), Positives = 41/47 (87%)
 Frame = +3

Query: 66  LSLPFVVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           + L  VVKV+GRTG R  VTQVRVKF+DDQNRLIMRNVKGPVREGD+
Sbjct: 5   VKLAVVVKVIGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDV 51


>tr|A9RXD9|A9RXD9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_198079 PE=4 SV=1
          Length = 65

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 37/47 (78%), Positives = 41/47 (87%)
 Frame = +3

Query: 66  LSLPFVVKVMGRTGLRFTVTQVRVKFVDDQNRLIMRNVKGPVREGDI 206
           + L  V+KV+GRTG R  VTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 5   VKLAIVMKVIGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51