DK958331
Clone id TST39A01NGRL0030_L14
Library
Length 745
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_L14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GATAAGGAAGAGGAGGATGGATGTGATTTTTGCCAGCCTTTTGGAGGCTTCTCCTCAACC
GCCCTTGCTAGTGCTCTTTCTCAAGCTCTCTCTGGTGATCTGCCCCTCTTGTCTACGACA
TGGCCGCCTGAATGGATGGACCAGCTTGCTCATTATTCCCAACTTCTGCCTGTTCCATGA
CCTTCCAAGTGCTCACACATTTTGGATGAGCAAGAAACCCATATACATGATTTAGTGTTC
CTTGTGTATTGCTTTTACTCCCTCTCTCATCTTCTGCCGCATGTGAGGTTACCATTCCTT
CCATCTTTTCTCACTGAGAAGTTTTGCATGTGCATAACACATACAGGAAGCACAATATTG
TGCCATGGTGCATCATCATGCTAGATGAGGATATTCTCACTACATCAACAAATGCACATG
TGTGACTATGGATTGCTTGCCACATGCAGCACAAAGGCTCTTACATACATACATCTCTAG
ACATGTCCCTTGTATGTGTGAATGCATGTATGATTCCTCGGGGCTTGCATGTACGCACGA
CATTTCATGTCATGCGATTCTGCATTCGAGTTTGCATGCATCACCTATGTTCTCAACCCA
GCACTGTCCATTCTTTTTGATCCAAGATGAGTTGACCCATGTACATTAACACCCTTCTTG
ACTTGTACATTTATGCCATTCTTCAGCTTTCTAAAAGCATGCCCTTTTGGATTTGCTAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9D7F2
Definition sp|Q9D7F2|LPD6B_MOUSE Ly6/PLAUR domain-containing protein 6B OS=Mus musculus
Align length 95
Score (bit) 37.4
E-value 0.082
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK958331|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_L14, 5'
(717 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9D7F2|LPD6B_MOUSE Ly6/PLAUR domain-containing protein 6B OS=... 37 0.082
sp|Q8NI32|LPD6B_HUMAN Ly6/PLAUR domain-containing protein 6B OS=... 33 1.2
sp|Q70LM7|LGRA_BREPA Linear gramicidin synthetase subunit A OS=B... 33 1.2
sp|P25446|TNR6_MOUSE Tumor necrosis factor receptor superfamily ... 33 2.0
sp|A3N353|NAGB_ACTP2 Glucosamine-6-phosphate deaminase OS=Actino... 31 7.7

>sp|Q9D7F2|LPD6B_MOUSE Ly6/PLAUR domain-containing protein 6B OS=Mus
musculus GN=Lypd6b PE=2 SV=1
Length = 191

Score = 37.4 bits (85), Expect = 0.082
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +2

Query: 344 QEAQYCAMVHHHAR*GYSHYINKCTCVTMDCLPHAAQRLLHTYISRHVPC--MCECMYDS 517
Q+ QYC VHH G S I K +C + H+ S H C CE M +
Sbjct: 90 QDTQYCLTVHHFTSHGRSTSITKKCASKNECHFVGCR---HSRDSEHTECRSCCEGMICN 146

Query: 518 SGLACTHDISCHAILHSSLHASPMFSTQHCPFFLI 622
L H + A++H+ + S+ P+ L+
Sbjct: 147 VELPTNHTNAVFAVMHAQRTSGSSVSSVPSPYLLV 181


>sp|Q8NI32|LPD6B_HUMAN Ly6/PLAUR domain-containing protein 6B
OS=Homo sapiens GN=LYPD6B PE=2 SV=1
Length = 183

Score = 33.5 bits (75), Expect = 1.2
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Frame = +2

Query: 344 QEAQYCAMVHHHAR*GYSHYINKCTCVTMDCLPHAAQRLLHTYISRHVPC--MCECMYDS 517
Q QYC VHH G S I K +C H+ S H C CE M +
Sbjct: 85 QNTQYCLTVHHFTSHGRSTSITKKCASRSECHFVGCH---HSRDSEHTECRSCCEGMICN 141

Query: 518 SGLACTHDISCHAILHSSLHASPMFSTQHCP 610
L H + A++H+ + T + P
Sbjct: 142 VELPTNHTNAVFAVMHAQRTSGSSAPTLYLP 172


>sp|Q70LM7|LGRA_BREPA Linear gramicidin synthetase subunit A
OS=Brevibacillus parabrevis GN=lgrA PE=1 SV=1
Length = 2273

Score = 33.5 bits (75), Expect = 1.2
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Frame = -3

Query: 310 EKMEGMVTSHAA------EDERGSKSNTQGTLNHVYGFLAHPKCVSTW----KVMEQAEV 161
E + +V H A E E+G QG ++GF C KV EQA V
Sbjct: 1849 ETLNALVLQHDALRMRFRETEQGIVQFHQGNEGKLFGFHVFD-CTEELDIAKKVEEQANV 1907

Query: 160 ---GNNEQAGPSIQAAMS*TRGADH 95
G N Q GP +QAA+ TR DH
Sbjct: 1908 LQSGMNLQEGPLVQAALFMTRTGDH 1932


>sp|P25446|TNR6_MOUSE Tumor necrosis factor receptor superfamily
member 6 OS=Mus musculus GN=Fas PE=1 SV=1
Length = 327

Score = 32.7 bits (73), Expect = 2.0
Identities = 15/71 (21%), Positives = 30/71 (42%)
Frame = +2

Query: 395 SHYINKCTCVTMDCLPHAAQRLLHTYISRHVPCMCECMYDSSGLACTHDISCHAILHSSL 574
+HY +KC T+ H + + ++++ C C+ + C H + C + H +L
Sbjct: 91 NHYADKCRRCTLCDEEHGLEVETNCTLTQNTKCKCKPDFYCDSPGCEHCVRCASCEHGTL 150

Query: 575 HASPMFSTQHC 607
S +C
Sbjct: 151 EPCTATSNTNC 161


>sp|A3N353|NAGB_ACTP2 Glucosamine-6-phosphate deaminase
OS=Actinobacillus pleuropneumoniae serotype 5b (strain
L20) GN=nagB PE=3 SV=1
Length = 267

Score = 30.8 bits (68), Expect = 7.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2

Query: 572 NSNAESHDMKCRAYMQAPRNHTCIHTYKGHV 480
N N E HD +CR Y + +++ IH + G V
Sbjct: 108 NGNTEDHDAECRRYEEKIKSYGKIHLFMGGV 138


tr_hit_id B1AXA0
Definition tr|B1AXA0|B1AXA0_MOUSE Novel protein OS=Mus musculus
Align length 95
Score (bit) 37.4
E-value 0.98
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK958331|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_L14, 5'
(717 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B1AXA0|B1AXA0_MOUSE Novel protein OS=Mus musculus GN=RP23-190... 37 0.98
tr|Q95JN7|Q95JN7_MACFA Putative uncharacterized protein OS=Macac... 35 6.4

>tr|B1AXA0|B1AXA0_MOUSE Novel protein OS=Mus musculus
GN=RP23-190C17.1 PE=4 SV=1
Length = 191

Score = 37.4 bits (85), Expect = 0.98
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +2

Query: 344 QEAQYCAMVHHHAR*GYSHYINKCTCVTMDCLPHAAQRLLHTYISRHVPC--MCECMYDS 517
Q+ QYC VHH G S I K +C + H+ S H C CE M +
Sbjct: 90 QDTQYCLTVHHFTSHGRSTSITKKCASKNECHFVGCR---HSRDSEHTECRSCCEGMICN 146

Query: 518 SGLACTHDISCHAILHSSLHASPMFSTQHCPFFLI 622
L H + A++H+ + S+ P+ L+
Sbjct: 147 VELPTNHTNAVFAVMHAQRTSGSSVSSVPSPYLLV 181


>tr|Q95JN7|Q95JN7_MACFA Putative uncharacterized protein OS=Macaca
fascicularis PE=2 SV=1
Length = 169

Score = 34.7 bits (78), Expect = 6.4
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Frame = +2

Query: 344 QEAQYCAMVHHHAR*GYSHYINKCTCVTMDCLPHAAQRLLHTYISRHVPC--MCECMYDS 517
Q QYC VHH G S I K +C H+ S H C CE M +
Sbjct: 71 QNTQYCLTVHHFTSHGRSTSITKKCASRSECHFVGCH---HSRDSEHTECRSCCEGMICN 127

Query: 518 SGLACTHDISCHAILHSSLHASPMFSTQHCP 610
L H + AI+H+ + T + P
Sbjct: 128 VELPTNHSNAVFAIMHAQRTSGSSAPTPYLP 158