DK959461 |
Clone id |
TST39A01NGRL0004_M01 |
Library |
TST39 |
Length |
661 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_M01. 5' end sequence. |
Accession |
DK959461 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL816Contig1 |
Sequence |
CATGGAGGTAATGCATGAGGAGGCAAATGGTTTAACTGTTGCGGAAGATATATATGATGT TGTGTATGAGGATGCTTTGGAGCTTAAATCACAGCAAGAGGGAGAGCAAGGTCTTGTCTC TTATGAGGAATGTATGCAACCAGTAGCAGAGAAGAGTGGGAATGCTTCAGTTGAAGAGGT TATGAGTTTTTGTGATGGTGAGAGTGTATGCACAGAGGTGGTACATGTTGAGAGTATGTT TGATGATGGAGTTGATAATCTTAGTTTTTTTGATAGCCTCATGCCTGAAGCAGTAGATGA TATGTCTTTCTCTTCTTCCTTTGATACTGGCATGCTGGAAAATGCTACTTGTGAGTTTTT TGATCGTCTGCTGGATGAAGAAGTACCTCTTGCATAAATTATGGGTGCTCCAAAGAAAGA TGATTCTTGTGCAGATGCCTTCAAGGTGTTCAAGGGTTTTGTATGCCTCTTTGCAGGGAT GTATGCGTTTCAATGCCTTTTGAAGGCTGCTTCTGTTGCTCATGATGATGCTTCAGGTGT TTTCAAGACTTTGGAATGCAATATACCCTATGTTGGCCTGAATATGGTTTTTTGTGCAGA GGATAACAACGAAGCTCGTTTTATGATGCACAGGCAGGTCGATGGCAGACTTATTGATGG T |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5VPE5 |
Definition |
sp|Q5VPE5|HOX28_ORYSJ Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. japonica |
Align length |
47 |
Score (bit) |
34.7 |
E-value |
0.46 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B4N3C7 |
Definition |
tr|B4N3C7|B4N3C7_DROWI GK18880 OS=Drosophila willistoni |
Align length |
26 |
Score (bit) |
30.0 |
E-value |
0.64 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959461|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0004_M01, 5' (661 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B4N3C7|B4N3C7_DROWI GK18880 OS=Drosophila willistoni GN=GK188... 30 0.64 tr|B6TMH5|B6TMH5_MAIZE Homeobox-leucine zipper protein ATHB-4 OS... 37 0.83 tr|B4J9G9|B4J9G9_DROGR GH20446 OS=Drosophila grimshawi GN=GH2044... 36 1.8 tr|Q9XEK5|Q9XEK5_CHLRE Gamete-specific homeodomain protein GSP1 ... 36 2.4 tr|A8I3J2|A8I3J2_CHLRE Gamete-specific transcription factor OS=C... 36 2.4 tr|A7QS94|A7QS94_VITVI Chromosome chr3 scaffold_157, whole genom... 35 3.1 tr|Q75EH6|Q75EH6_ASHGO AAR103Cp OS=Ashbya gossypii GN=AAR103C PE... 35 3.2 tr|Q2BHV6|Q2BHV6_9GAMM DNA glycosylase OS=Neptuniibacter caesari... 35 4.1 tr|A6ZSB8|A6ZSB8_YEAS7 A-agglutinin anchorage subunit OS=Sacchar... 35 4.1 tr|B0JZE3|B0JZE3_XENTR Foxg1 protein OS=Xenopus tropicalis GN=fo... 35 5.3 tr|B8B2B5|B8B2B5_ORYSI Putative uncharacterized protein OS=Oryza... 35 5.4 tr|B7E3F1|B7E3F1_ORYSJ cDNA clone:001-022-E09, full insert seque... 35 5.4 tr|A5DRR5|A5DRR5_LODEL Putative uncharacterized protein OS=Lodde... 35 5.4 tr|Q6C3M0|Q6C3M0_YARLI YALI0E33715p OS=Yarrowia lipolytica GN=YA... 34 7.1 tr|A7TPB7|A7TPB7_VANPO Putative uncharacterized protein OS=Vande... 34 9.1 tr|B1KV78|B1KV78_CLOBM Methyl-accepting chemotaxis protein OS=Cl... 34 9.2 tr|Q58PS8|Q58PS8_9PROT Hypothetical membrane protein OS=uncultur... 34 9.2 tr|A3GGK1|A3GGK1_PICST Cell wall protein in family of putative g... 34 9.2
>tr|B4N3C7|B4N3C7_DROWI GK18880 OS=Drosophila willistoni GN=GK18880 PE=4 SV=1 Length = 910
Score = 30.0 bits (66), Expect(2) = 0.64 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = -3
Query: 80 PKHPHTQHHIYLPQQLNHLPPHALPP 3 P HPH+ HH + P H H PP Sbjct: 36 PHHPHSHHHHHHPHPHGHPHAHGHPP 61
Score = 26.6 bits (57), Expect(2) = 0.64 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = -3
Query: 248 HHQTYSQHVPPLCIHSHHH 192 HH +S PP HSHHH Sbjct: 26 HHHHHSHSHPPHHPHSHHH 44
>tr|B6TMH5|B6TMH5_MAIZE Homeobox-leucine zipper protein ATHB-4 OS=Zea mays PE=2 SV=1 Length = 225
Score = 37.4 bits (85), Expect = 0.83 Identities = 21/46 (45%), Positives = 25/46 (54%) Frame = -2
Query: 324 SKEEEKDISSTASGMRLSKKLRLSTPSSNILSTCTTSVHTLSPSQK 187 S EEE+D A G +KKLRLS S +L HTL+P QK Sbjct: 62 SVEEEEDERGGAGGPHRAKKLRLSKEQSRLLEESFRLNHTLTPKQK 107
>tr|B4J9G9|B4J9G9_DROGR GH20446 OS=Drosophila grimshawi GN=GH20446 PE=4 SV=1 Length = 965
Score = 36.2 bits (82), Expect = 1.8 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 2/126 (1%) Frame = -3
Query: 392 QEVLLHPADDQKTHK*HFPACQYQRKKRKTYHLLLQA*GYQKN*DYQLHHQTYSQHVPPL 213 Q V HP + H+ Q Q +K H +LQ Q++ +Q HHQ QH Sbjct: 751 QSVQQHPHQIVQQHQEQ----QAQPVPQKQQHQILQQ---QQHSQHQQHHQQQQQH---- 799
Query: 212 CIHSHHHKNXXXXXXXXXXXXXXLVAYIPHKRQDLALPLAVI*APKHPHTQHHIYLP--Q 39 HH+ ++YI +Q+L P I + + P+ +I++P Q Sbjct: 800 ---QQHHQQQQQQHHQPNKQQQQQLSYITQPQQELQRP--SIQSIQQPYLTANIFVPYQQ 854
Query: 38 QLNHLP 21 Q HLP Sbjct: 855 QQQHLP 860
>tr|Q9XEK5|Q9XEK5_CHLRE Gamete-specific homeodomain protein GSP1 OS=Chlamydomonas reinhardtii GN=gsp1 PE=2 SV=3 Length = 1035
Score = 35.8 bits (81), Expect = 2.4 Identities = 27/91 (29%), Positives = 32/91 (35%) Frame = -3
Query: 275 YQKN*DYQLHHQTYSQHVPPLCIHSHHHKNXXXXXXXXXXXXXXLVAYIPHKRQDLALPL 96 +Q +Q HHQ + VP HSHH A+ PH Q Sbjct: 140 HQHQHQHQQHHQQHQHVVPAAVGHSHHQ------------AATAAAAHAPHYHQ------ 181
Query: 95 AVI*APKHPHTQHHIYLPQQLNHLPPHALPP 3 P+HPH H Y QQ H H L P Sbjct: 182 -----PQHPH--HQQYQQQQHVHHQQHPLMP 205
>tr|A8I3J2|A8I3J2_CHLRE Gamete-specific transcription factor OS=Chlamydomonas reinhardtii GN=GSP1 PE=3 SV=1 Length = 1035
Score = 35.8 bits (81), Expect = 2.4 Identities = 27/91 (29%), Positives = 32/91 (35%) Frame = -3
Query: 275 YQKN*DYQLHHQTYSQHVPPLCIHSHHHKNXXXXXXXXXXXXXXLVAYIPHKRQDLALPL 96 +Q +Q HHQ + VP HSHH A+ PH Q Sbjct: 140 HQHQHQHQQHHQQHQHVVPAAVGHSHHQ------------AATAAAAHAPHYHQ------ 181
Query: 95 AVI*APKHPHTQHHIYLPQQLNHLPPHALPP 3 P+HPH H Y QQ H H L P Sbjct: 182 -----PQHPH--HQQYQQQQHVHHQQHPLMP 205
>tr|A7QS94|A7QS94_VITVI Chromosome chr3 scaffold_157, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00005735001 PE=4 SV=1 Length = 442
Score = 35.4 bits (80), Expect = 3.1 Identities = 15/53 (28%), Positives = 27/53 (50%) Frame = +3
Query: 297 MICLSLLPLILACWKMLLVSFLIVCWMKKYLLHKLWVLQRKMILVQMPSRCSR 455 ++C+ +L L+L C+ + I W ++ L + W L RK L ++P R Sbjct: 384 LLCVMMLFLVLLCFAFPAIYARIASWRRRRALRRSWSLNRKSFLKRIPGGSER 436
>tr|Q75EH6|Q75EH6_ASHGO AAR103Cp OS=Ashbya gossypii GN=AAR103C PE=4 SV=1 Length = 878
Score = 35.4 bits (80), Expect = 3.2 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Frame = -2
Query: 327 VSKEEEKDISSTASGMRLSKKLRLSTPSSN--ILSTCT--TSVHTLSPSQKLITSSTEAF 160 V+ + ++D + +L+K L+L P ILSTC TS+H S + L+TS+ Sbjct: 18 VTYQNDRDTLFAVNKNQLTKILQLDKPEDEPEILSTCNEPTSIHLCSDRRLLVTSANGDV 77
Query: 159 PLFSATG 139 L+SA G Sbjct: 78 HLYSANG 84
>tr|Q2BHV6|Q2BHV6_9GAMM DNA glycosylase OS=Neptuniibacter caesariensis GN=MED92_00765 PE=3 SV=1 Length = 270
Score = 35.0 bits (79), Expect = 4.1 Identities = 23/88 (26%), Positives = 41/88 (46%) Frame = +2
Query: 92 QQEGEQGLVSYEECMQPVAEKSGNASVEEVMSFCDGESVCTEVVHVESMFDDGVDNLSFF 271 Q +GE + Y+ +P++E + E + S CDG V + + ++S GV N+ Sbjct: 118 QPKGEHHELLYKLGPEPLSE---GFNAEYLKSCCDGRKVAIKQLIMDSQVVVGVGNIYAT 174
Query: 272 DSLMPEAVDDMSFSSSFDTGMLENATCE 355 ++L A+D + + LEN E Sbjct: 175 EALFAAAIDPRRAAGNISRARLENLVVE 202
>tr|A6ZSB8|A6ZSB8_YEAS7 A-agglutinin anchorage subunit OS=Saccharomyces cerevisiae (strain YJM789) GN=AGA1 PE=4 SV=1 Length = 763
Score = 35.0 bits (79), Expect = 4.1 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 2/114 (1%) Frame = -2
Query: 477 PAKRHTKPLNTLKASAQESSFFGAPIIYARGTXXXXXXSKNSQVAFSSMPVSKEEEKDIS 298 P+ T T +S+ S+F + + T + S + S+ P SK + Sbjct: 224 PSSTSTSSSLTSTSSSSTSTFLSSTSTSSSSTSTSPSSTSTSSSSTSTSPSSKSTSSSST 283
Query: 297 STA-SGMRLSKKLRLSTPSSNILSTCTTSVHTLSPSQKLI-TSSTEAFPLFSAT 142 ST+ S S ++PSS +S+ +TS SPS K +SST P+ ++T Sbjct: 284 STSPSSTSTSSSSTSTSPSSTSISSSSTST---SPSSKSTSSSSTSTSPISTST 334
>tr|B0JZE3|B0JZE3_XENTR Foxg1 protein OS=Xenopus tropicalis GN=foxg1 PE=2 SV=1 Length = 432
Score = 34.7 bits (78), Expect = 5.3 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -3
Query: 74 HPHTQHHIYLPQQLNHLPPHALP 6 H H HH+ LPQQ +HL PH P Sbjct: 34 HHHHHHHLQLPQQSHHLQPHHRP 56
|