DK960971 |
Clone id |
TST39A01NGRL0008_N18 |
Library |
TST39 |
Length |
783 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_N18. 5' end sequence. |
Accession |
DK960971 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL3370Contig1 |
Sequence |
CGTAGGTCGATGGCAGGAGCAGCTTTCTCTCGGAGTAGGATCTCACTTGCTAGCCTCATT CAGAAGCTACCATCTCTTGCACCAGATGTAACTGATGGGACGGCTGGAGGTTTTGGCTTC TTGTTTAGAAGATGGGCAACAAAAAAAGCAGGAGGCTCCACACAAAATGGCAGAGATTCG AAGCCCAAAAACCTTGGTGTGAAGAAATTTGGTGGTCAGAAAGTTATCGCCGGAAACATC ATAATCCGACAGCGAGGAACGCGGTTCCATCCAGGAAACTATGTTGGAATGGGTAGGGAC CACACACTCTTTGCACTGCAGCCAGGTCATGTACGGTTTGAGAAGAACAGGAAAACTGGT CGCAAATGGGTACATGTGGACCCGGATGAGGGACCAAGAATCCATCCAGTGTATCAGAAT CTGCCAGCAGAATTTCTGCTGACTAATAACCAAAAACCCAAGACTAAACAAGTTGAGACT TAATCCTCCTTGGAAGCTATGCGCAAGGTACAGCAAAGCCAGCATGGGTTCATGAGCAAG AGCTTCTAGCCGAAATGGAAGTAAGGTCAGTCTCCCATCTGTAGGGTTGAGTATATGAGC AAATAACATTGCTGTGGTAAAATGTTCTCAGCATCGGAGTCTCTTAATGGAGGTTTCAAG ACTACTTATGGTTGGCGTTTGTGAAGTAGATATTATCTGCGTTGTCGCATTTTGTCACAT TACCATTTTACGGGAATTTGCAGTTTCTTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A5UI24 |
Definition |
sp|A5UI24|RL27_HAEIG 50S ribosomal protein L27 OS=Haemophilus influenzae (strain PittGG) |
Align length |
81 |
Score (bit) |
115.0 |
E-value |
2.0e-25 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8BAK1 |
Definition |
tr|B8BAK1|B8BAK1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica |
Align length |
131 |
Score (bit) |
179.0 |
E-value |
2.0e-43 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960971|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_N18, 5' (752 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8BAK1|B8BAK1_ORYSI Putative uncharacterized protein OS=Oryza... 179 2e-43 tr|Q9LXF9|Q9LXF9_ARATH Ribosomal protein L27-like OS=Arabidopsis... 178 3e-43 tr|Q94AC6|Q94AC6_ARATH AT5g15220/F8M21_110 OS=Arabidopsis thalia... 178 3e-43 tr|B7FGL1|B7FGL1_MEDTR Putative uncharacterized protein OS=Medic... 178 3e-43 tr|A9NZD2|A9NZD2_PICSI Putative uncharacterized protein OS=Picea... 177 7e-43 tr|Q9ZVX0|Q9ZVX0_ARATH 50S ribosomal protein L27 (At2g16930) OS=... 175 3e-42 tr|Q6ZKP0|Q6ZKP0_ORYSJ Os08g0404200 protein OS=Oryza sativa subs... 174 7e-42 tr|A2YV25|A2YV25_ORYSI Putative uncharacterized protein OS=Oryza... 174 7e-42 tr|Q7XMA7|Q7XMA7_ORYSJ Os04g0321500 protein OS=Oryza sativa subs... 173 1e-41 tr|A2YV24|A2YV24_ORYSI Putative uncharacterized protein OS=Oryza... 173 1e-41 tr|B6T4C5|B6T4C5_MAIZE 50S ribosomal protein L27 OS=Zea mays PE=... 172 2e-41 tr|B6SKA6|B6SKA6_MAIZE 50S ribosomal protein L27 OS=Zea mays PE=... 172 2e-41 tr|B6T300|B6T300_MAIZE 50S ribosomal protein L27 OS=Zea mays PE=... 170 1e-40 tr|A9T5W0|A9T5W0_PHYPA Predicted protein (Fragment) OS=Physcomit... 169 1e-40 tr|A7P912|A7P912_VITVI Chromosome chr3 scaffold_8, whole genome ... 162 2e-38 tr|A7LQ41|A7LQ41_HAEIN 50S ribosomal protein L27 OS=Haemophilus ... 115 2e-24 tr|A4NL37|A4NL37_HAEIN 50S ribosomal protein L27 OS=Haemophilus ... 115 2e-24 tr|A4ND32|A4ND32_HAEIN 50S ribosomal protein L27 OS=Haemophilus ... 115 2e-24 tr|A4N7V1|A4N7V1_HAEIN 50S ribosomal protein L27 OS=Haemophilus ... 115 2e-24 tr|A4N1F1|A4N1F1_HAEIN 50S ribosomal protein L27 OS=Haemophilus ... 115 2e-24 tr|A4MWG3|A4MWG3_HAEIN 50S ribosomal protein L27 OS=Haemophilus ... 115 2e-24 tr|B3GZE6|B3GZE6_ACTP7 50S ribosomal protein L27 OS=Actinobacill... 114 5e-24 tr|B1M699|B1M699_METRJ Ribosomal protein L27 OS=Methylobacterium... 114 5e-24 tr|B0BU26|B0BU26_ACTPJ 50S ribosomal protein L27 OS=Actinobacill... 114 5e-24 tr|Q2BZS3|Q2BZS3_9GAMM 50S ribosomal protein L27 OS=Photobacteri... 114 5e-24 tr|Q1ZLZ0|Q1ZLZ0_9VIBR 50S ribosomal protein L27 OS=Vibrio angus... 114 5e-24 tr|Q3LT95|Q3LT95_VIBHA 50S ribosomal subunit protein L27 OS=Vibr... 114 7e-24 tr|B6F3B0|B6F3B0_LIBAS 50S ribosomal protein L27 OS=Candidatus L... 114 7e-24 tr|A8T8F0|A8T8F0_9VIBR 50S ribosomal protein L27 OS=Vibrio campb... 114 7e-24 tr|A6BB35|A6BB35_VIBPA Ribosomal protein L27 OS=Vibrio parahaemo... 114 7e-24
>tr|B8BAK1|B8BAK1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_29172 PE=4 SV=1 Length = 244
Score = 179 bits (454), Expect = 2e-43 Identities = 86/131 (65%), Positives = 102/131 (77%), Gaps = 2/131 (1%) Frame = +1
Query: 28 SRSRISLAS--LIQKLPSLAPDVTDGTAGGFGFLFRRWATKKAGGSTQNGRDSKPKNLGV 201 S S SLA+ L +K SL + + ++GG +F+RWATKK GST+NGRDS PK LGV Sbjct: 101 SESCFSLANQALCEKRCSLLLETLEESSGGLSLIFKRWATKKTAGSTKNGRDSNPKYLGV 160
Query: 202 KKFGGQKVIAGNIIIRQRGTRFHPGNYVGMGRDHTLFALQPGHVRFEKNRKTGRKWVHVD 381 KKFGG+KV GNII+RQRGTRFHPGNYVGMG+DHTLF L+ GHVRFE+N+ TGRKWVHVD Sbjct: 161 KKFGGEKVEPGNIIVRQRGTRFHPGNYVGMGKDHTLFCLKEGHVRFERNKLTGRKWVHVD 220
Query: 382 PDEGPRIHPVY 414 P G +HPVY Sbjct: 221 PVAGHVLHPVY 231
>tr|Q9LXF9|Q9LXF9_ARATH Ribosomal protein L27-like OS=Arabidopsis thaliana GN=F8M21_110 PE=4 SV=1 Length = 162
Score = 178 bits (452), Expect = 3e-43 Identities = 81/132 (61%), Positives = 104/132 (78%), Gaps = 1/132 (0%) Frame = +1
Query: 37 RISLASLIQKLPSLA-PDVTDGTAGGFGFLFRRWATKKAGGSTQNGRDSKPKNLGVKKFG 213 R+SL LI ++P+ + ++DG++ G +F+RWATKK GST+NGRDS PK LGVKKFG Sbjct: 13 RVSLRELITEVPAYSGSSISDGSSSGLSLVFKRWATKKTAGSTKNGRDSNPKFLGVKKFG 72
Query: 214 GQKVIAGNIIIRQRGTRFHPGNYVGMGRDHTLFALQPGHVRFEKNRKTGRKWVHVDPDEG 393 G+ VI GNII+RQRGTRFHPG+YVG+G+DHTLFAL+ G VRFEK++ TGRKW+HVDP G Sbjct: 73 GESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRKWIHVDPTGG 132
Query: 394 PRIHPVYQNLPA 429 +HP+Y A Sbjct: 133 HVLHPIYTKAAA 144
>tr|Q94AC6|Q94AC6_ARATH AT5g15220/F8M21_110 OS=Arabidopsis thaliana GN=At5g15220 PE=2 SV=1 Length = 154
Score = 178 bits (452), Expect = 3e-43 Identities = 81/132 (61%), Positives = 104/132 (78%), Gaps = 1/132 (0%) Frame = +1
Query: 37 RISLASLIQKLPSLA-PDVTDGTAGGFGFLFRRWATKKAGGSTQNGRDSKPKNLGVKKFG 213 R+SL LI ++P+ + ++DG++ G +F+RWATKK GST+NGRDS PK LGVKKFG Sbjct: 13 RVSLRELITEVPAYSGSSISDGSSSGLSLVFKRWATKKTAGSTKNGRDSNPKFLGVKKFG 72
Query: 214 GQKVIAGNIIIRQRGTRFHPGNYVGMGRDHTLFALQPGHVRFEKNRKTGRKWVHVDPDEG 393 G+ VI GNII+RQRGTRFHPG+YVG+G+DHTLFAL+ G VRFEK++ TGRKW+HVDP G Sbjct: 73 GESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRKWIHVDPTGG 132
Query: 394 PRIHPVYQNLPA 429 +HP+Y A Sbjct: 133 HVLHPIYTKAAA 144
>tr|B7FGL1|B7FGL1_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 148
Score = 178 bits (452), Expect = 3e-43 Identities = 81/131 (61%), Positives = 104/131 (79%) Frame = +1
Query: 37 RISLASLIQKLPSLAPDVTDGTAGGFGFLFRRWATKKAGGSTQNGRDSKPKNLGVKKFGG 216 R+++ L+ +P + D + G +FRRWATKK GST+NGRDSKPKNLGVKKFGG Sbjct: 10 RLNIKELVTNVP-VYRSTADVSGEGLSLVFRRWATKKTAGSTKNGRDSKPKNLGVKKFGG 68
Query: 217 QKVIAGNIIIRQRGTRFHPGNYVGMGRDHTLFALQPGHVRFEKNRKTGRKWVHVDPDEGP 396 ++VI GNII+RQRGTRFHPGNYVG+G+DHTLFAL+ G V+FE+N+ TGRKWVHV+P EG Sbjct: 69 ERVIPGNIIVRQRGTRFHPGNYVGLGKDHTLFALKEGWVKFERNKLTGRKWVHVEPKEGH 128
Query: 397 RIHPVYQNLPA 429 +HPV+ ++ A Sbjct: 129 VLHPVFADVSA 139
>tr|A9NZD2|A9NZD2_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 145
Score = 177 bits (449), Expect = 7e-43 Identities = 81/112 (72%), Positives = 93/112 (83%) Frame = +1
Query: 82 PDVTDGTAGGFGFLFRRWATKKAGGSTQNGRDSKPKNLGVKKFGGQKVIAGNIIIRQRGT 261 PDV AG +FRRWATKKA GSTQNGRDS K LGVKKFGG+KVI GNII+RQRGT Sbjct: 26 PDVLGSNAGPLTLVFRRWATKKAAGSTQNGRDSHAKFLGVKKFGGEKVIPGNIIVRQRGT 85
Query: 262 RFHPGNYVGMGRDHTLFALQPGHVRFEKNRKTGRKWVHVDPDEGPRIHPVYQ 417 RFHPGNYVGMG+DHTL+AL+ GHV+F +N+ +GRKWVHV+P EG +HPVYQ Sbjct: 86 RFHPGNYVGMGKDHTLYALKEGHVKFARNKMSGRKWVHVEPIEGHVLHPVYQ 137
>tr|Q9ZVX0|Q9ZVX0_ARATH 50S ribosomal protein L27 (At2g16930) OS=Arabidopsis thaliana GN=At2g16930 PE=2 SV=2 Length = 154
Score = 175 bits (443), Expect = 3e-42 Identities = 80/132 (60%), Positives = 102/132 (77%), Gaps = 1/132 (0%) Frame = +1
Query: 37 RISLASLIQKLPSLA-PDVTDGTAGGFGFLFRRWATKKAGGSTQNGRDSKPKNLGVKKFG 213 R+SL LI ++P+ ++DG++ G + +RWATKK GST+NGRDS PK LGVKKFG Sbjct: 13 RVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNPKFLGVKKFG 72
Query: 214 GQKVIAGNIIIRQRGTRFHPGNYVGMGRDHTLFALQPGHVRFEKNRKTGRKWVHVDPDEG 393 G+ VI GNII+RQRGTRFHPG+YVG+G+DHTLFAL+ G VRFEK++ TGRKW+HVDP G Sbjct: 73 GESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRKWIHVDPIGG 132
Query: 394 PRIHPVYQNLPA 429 +HP+Y A Sbjct: 133 HVLHPIYTKAAA 144
>tr|Q6ZKP0|Q6ZKP0_ORYSJ Os08g0404200 protein OS=Oryza sativa subsp. japonica GN=OJ1118_A03.21 PE=2 SV=1 Length = 145
Score = 174 bits (440), Expect = 7e-42 Identities = 78/105 (74%), Positives = 89/105 (84%) Frame = +1
Query: 100 TAGGFGFLFRRWATKKAGGSTQNGRDSKPKNLGVKKFGGQKVIAGNIIIRQRGTRFHPGN 279 ++GG +F+RWATKK GST+NGRDS PK LGVKKFGG+KV GNIIIRQRGTRFHPGN Sbjct: 28 SSGGLSLIFKRWATKKTAGSTKNGRDSNPKYLGVKKFGGEKVEPGNIIIRQRGTRFHPGN 87
Query: 280 YVGMGRDHTLFALQPGHVRFEKNRKTGRKWVHVDPDEGPRIHPVY 414 YVGMG+DHTLF L+ GHVRFE+N+ TGRKWVHVDP G +HPVY Sbjct: 88 YVGMGKDHTLFCLKEGHVRFERNKLTGRKWVHVDPVAGHVLHPVY 132
>tr|A2YV25|A2YV25_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_29176 PE=4 SV=1 Length = 145
Score = 174 bits (440), Expect = 7e-42 Identities = 78/105 (74%), Positives = 89/105 (84%) Frame = +1
Query: 100 TAGGFGFLFRRWATKKAGGSTQNGRDSKPKNLGVKKFGGQKVIAGNIIIRQRGTRFHPGN 279 ++GG +F+RWATKK GST+NGRDS PK LGVKKFGG+KV GNIIIRQRGTRFHPGN Sbjct: 28 SSGGLSLIFKRWATKKTAGSTKNGRDSNPKYLGVKKFGGEKVEPGNIIIRQRGTRFHPGN 87
Query: 280 YVGMGRDHTLFALQPGHVRFEKNRKTGRKWVHVDPDEGPRIHPVY 414 YVGMG+DHTLF L+ GHVRFE+N+ TGRKWVHVDP G +HPVY Sbjct: 88 YVGMGKDHTLFCLKEGHVRFERNKLTGRKWVHVDPVAGHVLHPVY 132
>tr|Q7XMA7|Q7XMA7_ORYSJ Os04g0321500 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0041M06.7 PE=4 SV=2 Length = 145
Score = 173 bits (439), Expect = 1e-41 Identities = 77/105 (73%), Positives = 89/105 (84%) Frame = +1
Query: 100 TAGGFGFLFRRWATKKAGGSTQNGRDSKPKNLGVKKFGGQKVIAGNIIIRQRGTRFHPGN 279 ++GG +F+RWATKK GST+NGRDS PK LGVKKFGG+KV GNII+RQRGTRFHPGN Sbjct: 28 SSGGLSLIFKRWATKKTAGSTKNGRDSNPKYLGVKKFGGEKVEPGNIIVRQRGTRFHPGN 87
Query: 280 YVGMGRDHTLFALQPGHVRFEKNRKTGRKWVHVDPDEGPRIHPVY 414 YVGMG+DHTLF L+ GHVRFE+N+ TGRKWVHVDP G +HPVY Sbjct: 88 YVGMGKDHTLFCLKEGHVRFERNKLTGRKWVHVDPVAGHVLHPVY 132
>tr|A2YV24|A2YV24_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_29175 PE=4 SV=1 Length = 145
Score = 173 bits (438), Expect = 1e-41 Identities = 78/103 (75%), Positives = 87/103 (84%) Frame = +1
Query: 106 GGFGFLFRRWATKKAGGSTQNGRDSKPKNLGVKKFGGQKVIAGNIIIRQRGTRFHPGNYV 285 GG +F+RWATKK GST+NGRDS PK LGVKKFGG+KV GNIIIRQRGTRFHPGNYV Sbjct: 30 GGLSLIFKRWATKKTAGSTKNGRDSNPKYLGVKKFGGEKVEPGNIIIRQRGTRFHPGNYV 89
Query: 286 GMGRDHTLFALQPGHVRFEKNRKTGRKWVHVDPDEGPRIHPVY 414 GMG+DHTLF L+ GHVRFE+N+ TGRKWVHVDP G +HPVY Sbjct: 90 GMGKDHTLFCLKEGHVRFERNKLTGRKWVHVDPVAGHVLHPVY 132
|