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DK962686
Clone id TST39A01NGRL0014_I14
Library
Length 795
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_I14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TTCTTTCACAAGAATTTCGACGCCCCCCACGAGAGAGTGATGTGGCAGAGCTAATGGGGA
TGACTGTGGAAAAATTGAGGTCAATATCCAGGTCTACTAAGGTGTGCAAGTCTTTGGAGA
AGCCAGTTGGCAAAGATCTGAACACCACCTTAGGGGACTTCATAGCTGATGAGACACTTG
AAGATCCAGAATCAAAAATCATGAAGCAGCTGTTAAAGCAGGATGTGAAAAAGGTCTTAA
AAACTCTCACAGAAAGAGAAAAAACTGTGATGATATTGAGATATGGGCTTGAAGATGGAA
AAATGAGGACCTTAGAAGAGATTGGCAAGTTTTTTGATGTGACCAGGGAGAGAGTCCGTC
AGATAGAGGCGAAGGCAATGCGAAAGCTGAAGCAGCCGGAAAGGAACCAAGTACTGAAAG
GGTATATGGGTGCTGATCTATGATGCACTTTGTGGAGAGTAACAATTTCCTTTTGTAAAT
TTGTAATAGCCTTGATAGATTGGATTTTATCCCCATGCTCTTCTACGTTACTCAACACAG
TATACCTAAGCCAGATGCTTTTGTAGTGCTCTGTGGATGGGAAATTATTTGCGGATTGGC
CATCTTCACAAACACATTTAACAAGTCCAACTGCAGCATTTGGGAAGTTCAAAAATGAAA
TTATGGGAACCTTTGCGCCAAGCAAACATGTTAATTTTCTTTCTACCTTCCTTTTCTTGG
GAGCCTGCCAAAATTTTGTTTTTTTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P74565
Definition sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor rpoD OS=Synechocystis sp. (strain PCC 6803)
Align length 142
Score (bit) 139.0
E-value 2.0e-32
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962686|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_I14, 5'
         (750 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor rpoD OS=Synecho...   139   2e-32
sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1 OS=Microc...   136   1e-31
sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaen...   135   3e-31
sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synec...   134   7e-31
sp|P0A4J0|RPOD_STRR6 RNA polymerase sigma factor rpoD OS=Strepto...   123   1e-27
sp|P0A4I9|RPOD_STRPN RNA polymerase sigma factor rpoD OS=Strepto...   123   1e-27
sp|O33662|RPOD_STRMU RNA polymerase sigma factor rpoD OS=Strepto...   123   1e-27
sp|P33656|RPOD_CLOAB RNA polymerase sigma factor rpoD OS=Clostri...   118   4e-26
sp|P06224|RPOD_BACSU RNA polymerase sigma factor rpoD OS=Bacillu...   115   3e-25
sp|P52328|RPSD2_BACSP RNA polymerase sigma factor rpoD OS=Bacill...   115   3e-25
sp|P0A0I9|RPOD_STAAW RNA polymerase sigma factor rpoD OS=Staphyl...   115   3e-25
sp|Q6G905|RPOD_STAAS RNA polymerase sigma factor rpoD OS=Staphyl...   115   3e-25
sp|Q6GGD8|RPOD_STAAR RNA polymerase sigma factor rpoD OS=Staphyl...   115   3e-25
sp|P0A0I8|RPOD_STAAM RNA polymerase sigma factor rpoD OS=Staphyl...   115   3e-25
sp|Q5HFJ9|RPOD_STAAC RNA polymerase sigma factor rpoD OS=Staphyl...   115   3e-25
sp|P0A0J0|RPOD_STAA8 RNA polymerase sigma factor rpoD OS=Staphyl...   115   3e-25
sp|Q99TT5|RPOD_STAAN RNA polymerase sigma factor rpoD OS=Staphyl...   114   4e-25
sp|O66381|RPOD_BACHD RNA polymerase sigma factor rpoD OS=Bacillu...   114   4e-25
sp|Q8CP24|RPOD_STAES RNA polymerase sigma factor rpoD OS=Staphyl...   114   6e-25
sp|Q5HNY7|RPOD_STAEQ RNA polymerase sigma factor rpoD OS=Staphyl...   114   6e-25
sp|P77994|RPOD_THEMA RNA polymerase sigma factor rpoD OS=Thermot...   113   1e-24
sp|P52331|RPOD_LISMO RNA polymerase sigma factor rpoD OS=Listeri...   112   3e-24
sp|Q92BQ6|RPOD_LISIN RNA polymerase sigma factor rpoD OS=Listeri...   112   3e-24
sp|P52329|RPOD_ENTFA RNA polymerase sigma factor rpoD OS=Enteroc...   110   8e-24
sp|P59117|RPOD_LEPIN RNA polymerase sigma factor rpoD OS=Leptosp...   108   2e-23
sp|P61540|RPOD_LEPIC RNA polymerase sigma factor rpoD OS=Leptosp...   108   2e-23
sp|P58290|RPOD_LACLC RNA polymerase sigma factor rpoD (Fragment)...   108   2e-23
sp|Q04506|RPOD_LACLA RNA polymerase sigma factor rpoD OS=Lactoco...   108   2e-23
sp|O24744|RPOD_SHEVI RNA polymerase sigma factor rpoD OS=Shewane...   108   3e-23
sp|P43344|RPOD_SERMA RNA polymerase sigma factor rpoD (Fragment)...   107   5e-23

>sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor rpoD
           OS=Synechocystis sp. (strain PCC 6803) GN=rpoD PE=3 SV=1
          Length = 425

 Score =  139 bits (349), Expect = 2e-32
 Identities = 72/142 (50%), Positives = 98/142 (69%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           LSQE RR P E ++AE M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI  +  E
Sbjct: 284 LSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-E 342

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
            PE ++                  RE+ V+ LRYGL+DG+M+TLEEIG+ F+VTRER+RQ
Sbjct: 343 TPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQ 402

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKA+RKL+ P RN +LK Y+
Sbjct: 403 IEAKALRKLRHPNRNSILKEYI 424


>sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1
           OS=Microcystis aeruginosa GN=rpoD1 PE=3 SV=1
          Length = 416

 Score =  136 bits (343), Expect = 1e-31
 Identities = 71/142 (50%), Positives = 97/142 (68%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           LSQE RR P E ++A  M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI  +  E
Sbjct: 275 LSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-E 333

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
            PE ++                  RE+ V+ LRYGL+DG+M+TLEEIG+ F+VTRER+RQ
Sbjct: 334 TPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQ 393

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKA+RKL+ P RN +LK Y+
Sbjct: 394 IEAKALRKLRHPNRNSILKEYI 415


>sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaena
           sp. (strain PCC 7120) GN=rpoD PE=3 SV=1
          Length = 390

 Score =  135 bits (339), Expect = 3e-31
 Identities = 71/142 (50%), Positives = 96/142 (67%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           LSQE  R P E ++A  M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI  +  E
Sbjct: 249 LSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-E 307

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
            PE ++                  RE+ V+ LRYGL+DG+M+TLEEIG+ F+VTRER+RQ
Sbjct: 308 TPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQ 367

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKA+RKL+ P RN VLK Y+
Sbjct: 368 IEAKALRKLRHPNRNSVLKEYI 389


>sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1
           OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD1
           PE=3 SV=2
          Length = 399

 Score =  134 bits (336), Expect = 7e-31
 Identities = 70/142 (49%), Positives = 96/142 (67%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           LSQE  R P E ++A  M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI  +  E
Sbjct: 258 LSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-E 316

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
            PE ++                  RE+ V+ LRYGL+DG+M+TLEEIG+ F+VTRER+RQ
Sbjct: 317 TPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQ 376

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKA+RKL+ P RN +LK Y+
Sbjct: 377 IEAKALRKLRHPNRNSILKEYI 398


>sp|P0A4J0|RPOD_STRR6 RNA polymerase sigma factor rpoD
           OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
           GN=rpoD PE=3 SV=1
          Length = 369

 Score =  123 bits (308), Expect = 1e-27
 Identities = 63/142 (44%), Positives = 92/142 (64%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           L QE  + P    +AE M MT +K+R I +  +   SLE P+G++ ++ LGDFI DE +E
Sbjct: 226 LLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIE 285

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
           +P                     +RE+ V+ LR+GL+DGKMRTLE++GK F+VTRER+RQ
Sbjct: 286 NPVDYTTRIVLREQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQ 345

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKA+RKL+QP R++ L+ ++
Sbjct: 346 IEAKALRKLRQPSRSKPLRDFI 367


>sp|P0A4I9|RPOD_STRPN RNA polymerase sigma factor rpoD
           OS=Streptococcus pneumoniae GN=rpoD PE=3 SV=1
          Length = 369

 Score =  123 bits (308), Expect = 1e-27
 Identities = 63/142 (44%), Positives = 92/142 (64%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           L QE  + P    +AE M MT +K+R I +  +   SLE P+G++ ++ LGDFI DE +E
Sbjct: 226 LLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIE 285

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
           +P                     +RE+ V+ LR+GL+DGKMRTLE++GK F+VTRER+RQ
Sbjct: 286 NPVDYTTRIVLREQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQ 345

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKA+RKL+QP R++ L+ ++
Sbjct: 346 IEAKALRKLRQPSRSKPLRDFI 367


>sp|O33662|RPOD_STRMU RNA polymerase sigma factor rpoD
           OS=Streptococcus mutans GN=rpoD PE=3 SV=1
          Length = 371

 Score =  123 bits (308), Expect = 1e-27
 Identities = 63/142 (44%), Positives = 91/142 (64%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           L QE  + P    +AE M MT +K+R I +  +   SLE P+G++ ++ LGDFI DE +E
Sbjct: 228 LLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIE 287

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
           +P                     +RE+ V+ LR+GL+DGKMRTLE++GK FDVTRER+RQ
Sbjct: 288 NPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFDVTRERIRQ 347

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKA+RKL+ P R++ L+ ++
Sbjct: 348 IEAKALRKLRHPSRSKQLRDFV 369


>sp|P33656|RPOD_CLOAB RNA polymerase sigma factor rpoD
           OS=Clostridium acetobutylicum GN=rpoD PE=3 SV=1
          Length = 378

 Score =  118 bits (295), Expect = 4e-26
 Identities = 61/142 (42%), Positives = 89/142 (62%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           L QE  R P+  ++A++M M V+K+R I +  +   SLE P+G++ ++ LGDFI D+   
Sbjct: 236 LLQELGREPQPEEIAKIMDMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAP 295

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
            P                      RE+ V+ LR+GL+DG+ RTLEE+GK F+VTRER+RQ
Sbjct: 296 APADAAAFRMLKEQLLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQ 355

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKA+RKL+ P R++ LK Y+
Sbjct: 356 IEAKALRKLRHPSRSKKLKDYL 377


>sp|P06224|RPOD_BACSU RNA polymerase sigma factor rpoD OS=Bacillus
           subtilis GN=sigA PE=1 SV=1
          Length = 371

 Score =  115 bits (288), Expect = 3e-25
 Identities = 60/142 (42%), Positives = 87/142 (61%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           L Q+  R P   ++AE M +T EK+R I +  +   SLE P+G++ ++ LGDFI D+   
Sbjct: 229 LLQDLGREPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAT 288

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
            P                     +RE+ V+ LR+GL+DG+ RTLEE+GK F VTRER+RQ
Sbjct: 289 SPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQ 348

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKA+RKL+ P R++ LK ++
Sbjct: 349 IEAKALRKLRHPSRSKRLKDFL 370


>sp|P52328|RPSD2_BACSP RNA polymerase sigma factor rpoD OS=Bacillus
           sp. GN=sigA PE=3 SV=1
          Length = 377

 Score =  115 bits (287), Expect = 3e-25
 Identities = 61/142 (42%), Positives = 87/142 (61%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           L QE  R P   ++A  M ++VEK+R I +  +   SLE P+G++ ++ LGDFI D+   
Sbjct: 235 LLQELGREPTPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEAL 294

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
            P                     ERE+ V+ LR+GL+DG+ RTLEE+GK F VTRER+RQ
Sbjct: 295 TPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQ 354

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKA+RKL+ P R++ LK ++
Sbjct: 355 IEAKALRKLRHPSRSKRLKDFL 376
tr_hit_id Q9AYR7
Definition tr|Q9AYR7|Q9AYR7_PHYPA PpSIG2 OS=Physcomitrella patens
Align length 142
Score (bit) 143.0
E-value 1.0e-32
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962686|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_I14, 5'
         (750 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9AYR7|Q9AYR7_PHYPA PpSIG2 OS=Physcomitrella patens GN=Sig2 P...   143   1e-32
tr|A9RXT3|A9RXT3_PHYPA Plastid sigma facor SIG2 OS=Physcomitrell...   143   1e-32
tr|Q7V698|Q7V698_PROMM RNA polymerase sigma factor OS=Prochloroc...   142   3e-32
tr|Q7U5C4|Q7U5C4_SYNPX RNA polymerase sigma factor OS=Synechococ...   142   3e-32
tr|Q46GS6|Q46GS6_PROMT RNA polymerase sigma factor OS=Prochloroc...   142   3e-32
tr|Q3AWQ6|Q3AWQ6_SYNS9 RNA polymerase sigma factor OS=Synechococ...   142   3e-32
tr|Q3ALS7|Q3ALS7_SYNSC RNA polymerase sigma factor OS=Synechococ...   142   3e-32
tr|Q0I8I7|Q0I8I7_SYNS3 RNA polymerase sigma factor OS=Synechococ...   142   3e-32
tr|A5GJC2|A5GJC2_SYNPW RNA polymerase sigma factor OS=Synechococ...   142   3e-32
tr|A2C7M0|A2C7M0_PROM3 RNA polymerase sigma factor OS=Prochloroc...   142   3e-32
tr|A2C0V5|A2C0V5_PROM1 RNA polymerase sigma factor OS=Prochloroc...   142   3e-32
tr|Q05YJ7|Q05YJ7_9SYNE RNA polymerase sigma factor OS=Synechococ...   142   3e-32
tr|Q05RP2|Q05RP2_9SYNE RNA polymerase sigma factor OS=Synechococ...   142   3e-32
tr|B5ILG7|B5ILG7_9CHRO DNA-directed RNA polymerase sigma subunit...   142   3e-32
tr|A4CRY9|A4CRY9_SYNPV RNA polymerase sigma factor OS=Synechococ...   142   3e-32
tr|A3Z5L5|A3Z5L5_9SYNE RNA polymerase sigma factor OS=Synechococ...   142   3e-32
tr|A3YZH3|A3YZH3_9SYNE RNA polymerase sigma factor OS=Synechococ...   142   3e-32
tr|B1X5Q2|B1X5Q2_PAUCH RNA polymerase sigma factor OS=Paulinella...   142   3e-32
tr|Q7VD88|Q7VD88_PROMA RNA polymerase sigma factor OS=Prochloroc...   141   5e-32
tr|Q7V2I0|Q7V2I0_PROMP RNA polymerase sigma factor OS=Prochloroc...   141   5e-32
tr|Q31C37|Q31C37_PROM9 RNA polymerase sigma factor OS=Prochloroc...   141   5e-32
tr|A9BEB7|A9BEB7_PROM4 RNA polymerase sigma factor OS=Prochloroc...   141   5e-32
tr|A8G3L2|A8G3L2_PROM2 RNA polymerase sigma factor OS=Prochloroc...   141   5e-32
tr|A3PBM1|A3PBM1_PROM0 RNA polymerase sigma factor OS=Prochloroc...   141   5e-32
tr|A2BVF8|A2BVF8_PROM5 RNA polymerase sigma factor OS=Prochloroc...   141   5e-32
tr|A2BPX8|A2BPX8_PROMS RNA polymerase sigma factor OS=Prochloroc...   141   5e-32
tr|A5GSD3|A5GSD3_SYNR3 RNA polymerase sigma factor OS=Synechococ...   138   4e-31
tr|B7K1V2|B7K1V2_SYNP8 RNA polymerase, sigma 70 subunit, RpoD su...   137   8e-31
tr|B4BYZ0|B4BYZ0_9CHRO RNA polymerase, sigma 70 subunit, RpoD fa...   137   8e-31
tr|B1WS32|B1WS32_CYAA5 Group 1 sigma-70 RNA polymerase sigma fac...   136   1e-30

>tr|Q9AYR7|Q9AYR7_PHYPA PpSIG2 OS=Physcomitrella patens GN=Sig2 PE=2
           SV=1
          Length = 579

 Score =  143 bits (360), Expect = 1e-32
 Identities = 71/142 (50%), Positives = 98/142 (69%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           L QE  R  R  +VAEL+G+TVEKL+S+ +S K   S+E+P+GKD +TTLG+ +AD  ++
Sbjct: 431 LVQEHGREARNEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVD 490

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
            PE  I+                 RE+ V+ LR+GL+DG+ +TLEEIG+ F VTRER+RQ
Sbjct: 491 SPEDAIVKQLMRQDIEGVLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQ 550

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKAMRKL+QP RN +L+ Y+
Sbjct: 551 IEAKAMRKLRQPSRNSILREYL 572


>tr|A9RXT3|A9RXT3_PHYPA Plastid sigma facor SIG2 OS=Physcomitrella
           patens subsp. patens GN=PpSig2 PE=4 SV=1
          Length = 579

 Score =  143 bits (360), Expect = 1e-32
 Identities = 71/142 (50%), Positives = 98/142 (69%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           L QE  R  R  +VAEL+G+TVEKL+S+ +S K   S+E+P+GKD +TTLG+ +AD  ++
Sbjct: 431 LVQEHGREARNEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVD 490

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
            PE  I+                 RE+ V+ LR+GL+DG+ +TLEEIG+ F VTRER+RQ
Sbjct: 491 SPEDAIVKQLMRQDIEGVLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQ 550

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKAMRKL+QP RN +L+ Y+
Sbjct: 551 IEAKAMRKLRQPSRNSILREYL 572


>tr|Q7V698|Q7V698_PROMM RNA polymerase sigma factor
           OS=Prochlorococcus marinus (strain MIT 9313) GN=sigA/
           rpoD PE=3 SV=1
          Length = 461

 Score =  142 bits (357), Expect = 3e-32
 Identities = 74/142 (52%), Positives = 99/142 (69%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           LSQEF R P E ++AE M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI  +T E
Sbjct: 320 LSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDT-E 378

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
           +PE  +                  RE+ V+ LRYGL+DG+M+TLEEIG+ F+VTRER+RQ
Sbjct: 379 NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQ 438

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKA+RKL+ P RN VLK Y+
Sbjct: 439 IEAKALRKLRHPNRNGVLKEYI 460


>tr|Q7U5C4|Q7U5C4_SYNPX RNA polymerase sigma factor OS=Synechococcus
           sp. (strain WH8102) GN=sigA/ rpoD PE=3 SV=1
          Length = 471

 Score =  142 bits (357), Expect = 3e-32
 Identities = 74/142 (52%), Positives = 99/142 (69%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           LSQEF R P E ++AE M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI +  +E
Sbjct: 330 LSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIE 388

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
           +PE  +                  RE+ V+ LRYGL+DG+M+TLEEIG+ FDVTRER+RQ
Sbjct: 389 NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQ 448

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKA+RKL+ P RN VLK Y+
Sbjct: 449 IEAKALRKLRHPNRNGVLKEYI 470


>tr|Q46GS6|Q46GS6_PROMT RNA polymerase sigma factor
           OS=Prochlorococcus marinus (strain NATL2A) GN=PMN2A_1829
           PE=3 SV=1
          Length = 420

 Score =  142 bits (357), Expect = 3e-32
 Identities = 74/142 (52%), Positives = 99/142 (69%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           LSQEF R P E ++AE M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI +  +E
Sbjct: 277 LSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIE 335

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
           +PE  +                  RE+ V+ LRYGL+DG+M+TLEEIG+ FDVTRER+RQ
Sbjct: 336 NPEQDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQ 395

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKA+RKL+ P RN VLK Y+
Sbjct: 396 IEAKALRKLRHPNRNGVLKEYI 417


>tr|Q3AWQ6|Q3AWQ6_SYNS9 RNA polymerase sigma factor OS=Synechococcus
           sp. (strain CC9902) GN=Syncc9902_1678 PE=3 SV=1
          Length = 451

 Score =  142 bits (357), Expect = 3e-32
 Identities = 74/142 (52%), Positives = 99/142 (69%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           LSQEF R P E ++AE M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI +  +E
Sbjct: 310 LSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIE 368

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
           +PE  +                  RE+ V+ LRYGL+DG+M+TLEEIG+ FDVTRER+RQ
Sbjct: 369 NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQ 428

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKA+RKL+ P RN VLK Y+
Sbjct: 429 IEAKALRKLRHPNRNGVLKEYI 450


>tr|Q3ALS7|Q3ALS7_SYNSC RNA polymerase sigma factor OS=Synechococcus
           sp. (strain CC9605) GN=Syncc9605_0681 PE=3 SV=1
          Length = 435

 Score =  142 bits (357), Expect = 3e-32
 Identities = 74/142 (52%), Positives = 99/142 (69%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           LSQEF R P E ++AE M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI +  +E
Sbjct: 294 LSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIE 352

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
           +PE  +                  RE+ V+ LRYGL+DG+M+TLEEIG+ FDVTRER+RQ
Sbjct: 353 NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQ 412

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKA+RKL+ P RN VLK Y+
Sbjct: 413 IEAKALRKLRHPNRNGVLKEYI 434


>tr|Q0I8I7|Q0I8I7_SYNS3 RNA polymerase sigma factor OS=Synechococcus
           sp. (strain CC9311) GN=rpoD PE=3 SV=1
          Length = 440

 Score =  142 bits (357), Expect = 3e-32
 Identities = 74/142 (52%), Positives = 99/142 (69%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           LSQEF R P E ++AE M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI +  +E
Sbjct: 299 LSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIE 357

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
           +PE  +                  RE+ V+ LRYGL+DG+M+TLEEIG+ FDVTRER+RQ
Sbjct: 358 NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQ 417

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKA+RKL+ P RN VLK Y+
Sbjct: 418 IEAKALRKLRHPNRNGVLKEYI 439


>tr|A5GJC2|A5GJC2_SYNPW RNA polymerase sigma factor OS=Synechococcus
           sp. (strain WH7803) GN=rpoD PE=3 SV=1
          Length = 450

 Score =  142 bits (357), Expect = 3e-32
 Identities = 74/142 (52%), Positives = 99/142 (69%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           LSQEF R P E ++AE M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI +  +E
Sbjct: 309 LSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIE 367

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
           +PE  +                  RE+ V+ LRYGL+DG+M+TLEEIG+ FDVTRER+RQ
Sbjct: 368 NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQ 427

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKA+RKL+ P RN VLK Y+
Sbjct: 428 IEAKALRKLRHPNRNGVLKEYI 449


>tr|A2C7M0|A2C7M0_PROM3 RNA polymerase sigma factor
           OS=Prochlorococcus marinus (strain MIT 9303)
           GN=P9303_07291 PE=3 SV=1
          Length = 444

 Score =  142 bits (357), Expect = 3e-32
 Identities = 74/142 (52%), Positives = 99/142 (69%)
 Frame = +3

Query: 3   LSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADETLE 182
           LSQEF R P E ++AE M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI  +T E
Sbjct: 303 LSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDT-E 361

Query: 183 DPESKIMXXXXXXXXXXXXXXXXEREKTVMILRYGLEDGKMRTLEEIGKFFDVTRERVRQ 362
           +PE  +                  RE+ V+ LRYGL+DG+M+TLEEIG+ F+VTRER+RQ
Sbjct: 362 NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQ 421

Query: 363 IEAKAMRKLKQPERNQVLKGYM 428
           IEAKA+RKL+ P RN VLK Y+
Sbjct: 422 IEAKALRKLRHPNRNGVLKEYI 443