Pyropia yezoensis | |
Scientific name | Pyropia yezoensis |
Scientific name authority | Pyropia yezoensis (Ueda) M.S.Hwang & H.G.Choi |
Taxonomy ID | 2788 |
Phylum division | - |
Family | Bangiaceae |
Genus | Pyropia |
Species | yezoensis |
Variety | - |
Common name | Susabi-nori |
Synonym | Porphyra yezoensis |
Links (DFCI) | - |
Resource info | - |
Reference | handle: 2115/23458 |
Sequencing method | Roche GS-FLX/FLX+, Illumina GA IIx |
Reads count | 9.7 Gb |
Assembly method | CLC Assembly Cell version 4.06 beta |
Sequencing depth | 166x |
Gene annotation method | AUGUSTUS |
Contig count | 46634 |
Scaffold count | - |
Gene count | 10327 |
Chromosome count | 2n=6 |
Covered region | 43 Mb |
Genome size | 260 |
ORF count | - |
GC content | - |
Contact | - |
Country | - |
Links (GOLD) | - |
Links (NCBI Genome) | - |
Description | Seaweeds belonging to the Bangiaceae family are distributed along the coastline worldwide, except for tropical regions. There are as many as 29 species along the Japanese coastline. Major species are asakusa-nori and susabi-nori. The life cycle of P. yezoensis consists of leafy gametophytes and filamentous sporophytes. The lifecycle can be completed in a laboratory culture system. In 2013, a Japanese group published a draft genome sequence, which indicated that the genome size of P. yezoensis is 65 Mb; approximately 25% of previous predictions. References |
Links (Marker list) | - |
Links (QTL list) | - |
Links (KNApSAcK Core) | - |
Links (Skewered KNApSAcK) | - |
Links (Mass Base) | - |