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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943808
Clone id YMU02A01NGRL0004_A08
Library
Length 398
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_A08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TGGTGAAAGTCATGGGGCGGACTGGCTCCCGAGGTCAAGTGGCTCAAGTGAGGGTCAAGT
TTGTCGATGACCAAAATCGTCTCATCATGAGAAATGTGAAAGGTCCTGTCCGAGAAGGAG
ATATCCTAGCTCTTTTGGAGTCTGAGAGAGAGGCTCGAAGACTTCGATAGCTGTGGTGGT
TTTTTGATGGTTCGAATGGGCTATTGTCATGGATCATAAGTTGGAAAAGCATTTTGGAGA
GTACGGCCGGTTATAGGATGATAGGCTTGCTGTTTTGGCAACAACTTAATCATGTTTTTG
ACAATGCGGCATGTGCTTCTATGTAACATGAGTTTTTCAGATTGATGAGAATCAAGTATT
GTTTTTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P46302
Definition sp|P46302|RS28_MAIZE 40S ribosomal protein S28 OS=Zea mays
Align length 41
Score (bit) 77.8
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943808|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_A08, 5'
         (368 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46302|RS28_MAIZE 40S ribosomal protein S28 OS=Zea mays GN=RP...    78   2e-14
sp|P34789|RS282_ARATH 40S ribosomal protein S28-2 OS=Arabidopsis...    68   2e-11
sp|Q9SR73|RS281_ARATH 40S ribosomal protein S28-1 OS=Arabidopsis...    68   2e-11
sp|Q90YP3|RS28_ICTPU 40S ribosomal protein S28 OS=Ictalurus punc...    67   3e-11
sp|Q6PBK3|RS28_DANRE 40S ribosomal protein S28 OS=Danio rerio GN...    67   3e-11
sp|P33286|RS28_KLUMA 40S ribosomal protein S28 OS=Kluyveromyces ...    65   8e-11
sp|P33285|RS28_KLULA 40S ribosomal protein S28 OS=Kluyveromyces ...    65   8e-11
sp|Q74ZD8|RS28_ASHGO 40S ribosomal protein S28 OS=Ashbya gossypi...    65   1e-10
sp|P62859|RS28_RAT 40S ribosomal protein S28 OS=Rattus norvegicu...    65   1e-10
sp|Q6QAT1|RS28_PIG 40S ribosomal protein S28 OS=Sus scrofa GN=RP...    65   1e-10
sp|P62858|RS28_MOUSE 40S ribosomal protein S28 OS=Mus musculus G...    65   1e-10
sp|P62857|RS28_HUMAN 40S ribosomal protein S28 OS=Homo sapiens G...    65   1e-10
sp|Q56JX6|RS28_BOVIN 40S ribosomal protein S28 OS=Bos taurus GN=...    65   1e-10
sp|Q10421|RS28_SCHPO 40S ribosomal protein S28 OS=Schizosaccharo...    64   2e-10
sp|Q9W334|RS28_DROME 40S ribosomal protein S28 OS=Drosophila mel...    64   2e-10
sp|Q7S6W5|RS28_NEUCR 40S ribosomal protein S28 OS=Neurospora cra...    64   2e-10
sp|Q6FLC3|RS28_CANGA 40S ribosomal protein S28 OS=Candida glabra...    64   3e-10
sp|P0C0X0|RS28B_YEAST 40S ribosomal protein S28-B OS=Saccharomyc...    64   3e-10
sp|Q3E7X9|RS28A_YEAST 40S ribosomal protein S28-A OS=Saccharomyc...    64   3e-10
sp|Q95Y04|RS28_CAEEL 40S ribosomal protein S28 OS=Caenorhabditis...    63   4e-10
sp|Q962Q2|RS28_SPOFR 40S ribosomal protein S28 OS=Spodoptera fru...    61   2e-09
sp|Q6EV21|RS28_PAPDA 40S ribosomal protein S28 OS=Papilio dardan...    61   2e-09
sp|Q6PS50|RS28_BOMMO 40S ribosomal protein S28 OS=Bombyx mori GN...    61   2e-09
sp|O61590|RS28_OSTOS 40S ribosomal protein S28 OS=Ostertagia ost...    59   8e-09
sp|Q8TVE7|RS28_METKA 30S ribosomal protein S28e OS=Methanopyrus ...    54   2e-07
sp|Q8ZTA7|RS28_PYRAE 30S ribosomal protein S28e OS=Pyrobaculum a...    50   3e-06
sp|A1RXH2|RS28_THEPD 30S ribosomal protein S28e OS=Thermofilum p...    50   5e-06
sp|P61031|RS28_NANEQ 30S ribosomal protein S28e OS=Nanoarchaeum ...    50   5e-06
sp|P61030|RS28_PYRHO 30S ribosomal protein S28e OS=Pyrococcus ho...    49   6e-06
sp|P61029|RS28_PYRAB 30S ribosomal protein S28e OS=Pyrococcus ab...    49   6e-06

>sp|P46302|RS28_MAIZE 40S ribosomal protein S28 OS=Zea mays GN=RPS28
           PE=3 SV=1
          Length = 65

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 38/41 (92%), Positives = 39/41 (95%)
 Frame = +3

Query: 3   VKVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           VKVMGRTGSRGQV QVRVKF+DDQNRLIMRNVKGPV EGDI
Sbjct: 11  VKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDI 51


>sp|P34789|RS282_ARATH 40S ribosomal protein S28-2 OS=Arabidopsis
           thaliana GN=RPS28C PE=2 SV=1
          Length = 64

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 34/41 (82%), Positives = 36/41 (87%)
 Frame = +3

Query: 3   VKVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           VKVMGRTGSRGQV QVRVKF  D +R IMRNVKGPVREGD+
Sbjct: 11  VKVMGRTGSRGQVTQVRVKFT-DSDRFIMRNVKGPVREGDV 50


>sp|Q9SR73|RS281_ARATH 40S ribosomal protein S28-1 OS=Arabidopsis
           thaliana GN=RPS28A PE=2 SV=1
          Length = 64

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 35/41 (85%), Positives = 36/41 (87%)
 Frame = +3

Query: 3   VKVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           VKVMGRTGSRGQV QVRVKF  D +R IMRNVKGPVREGDI
Sbjct: 11  VKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDI 50


>sp|Q90YP3|RS28_ICTPU 40S ribosomal protein S28 OS=Ictalurus
           punctatus GN=rps28 PE=3 SV=1
          Length = 69

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = +3

Query: 6   KVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           KV+GRTGS+GQ  QVRV+F+DD NR I+RNVKGPVREGD+
Sbjct: 16  KVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55


>sp|Q6PBK3|RS28_DANRE 40S ribosomal protein S28 OS=Danio rerio
           GN=rps28 PE=3 SV=1
          Length = 69

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = +3

Query: 6   KVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           KV+GRTGS+GQ  QVRV+F+DD NR I+RNVKGPVREGD+
Sbjct: 16  KVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55


>sp|P33286|RS28_KLUMA 40S ribosomal protein S28 OS=Kluyveromyces
           marxianus GN=RPS28 PE=3 SV=1
          Length = 67

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 30/41 (73%), Positives = 36/41 (87%)
 Frame = +3

Query: 3   VKVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           +KV+GRTGSRG V QVRV+F++D  R I+RNVKGPVREGDI
Sbjct: 13  IKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDI 53


>sp|P33285|RS28_KLULA 40S ribosomal protein S28 OS=Kluyveromyces
           lactis GN=RPS28 PE=3 SV=1
          Length = 67

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 30/41 (73%), Positives = 36/41 (87%)
 Frame = +3

Query: 3   VKVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           +KV+GRTGSRG V QVRV+F++D  R I+RNVKGPVREGDI
Sbjct: 13  IKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDI 53


>sp|Q74ZD8|RS28_ASHGO 40S ribosomal protein S28 OS=Ashbya gossypii
           GN=RPS28A PE=3 SV=1
          Length = 67

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 30/41 (73%), Positives = 36/41 (87%)
 Frame = +3

Query: 3   VKVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           +KV+GRTGSRG V QVRV+F+DD +R I+RNVKGPVRE DI
Sbjct: 13  IKVLGRTGSRGGVTQVRVEFLDDTSRTIVRNVKGPVRENDI 53


>sp|P62859|RS28_RAT 40S ribosomal protein S28 OS=Rattus norvegicus
           GN=Rps28 PE=1 SV=1
          Length = 69

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 29/40 (72%), Positives = 36/40 (90%)
 Frame = +3

Query: 6   KVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           KV+GRTGS+GQ  QVRV+F+DD +R I+RNVKGPVREGD+
Sbjct: 16  KVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55


>sp|Q6QAT1|RS28_PIG 40S ribosomal protein S28 OS=Sus scrofa GN=RPS28
           PE=3 SV=2
          Length = 69

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 29/40 (72%), Positives = 36/40 (90%)
 Frame = +3

Query: 6   KVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           KV+GRTGS+GQ  QVRV+F+DD +R I+RNVKGPVREGD+
Sbjct: 16  KVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55
tr_hit_id Q7X9K4
Definition tr|Q7X9K4|Q7X9K4_WHEAT S28 ribosomal protein (Fragment) OS=Triticum aestivum
Align length 41
Score (bit) 80.9
E-value 3.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943808|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_A08, 5'
         (368 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7X9K4|Q7X9K4_WHEAT S28 ribosomal protein (Fragment) OS=Triti...    81   3e-14
tr|Q0IXR7|Q0IXR7_ORYSJ Os10g0411700 protein OS=Oryza sativa subs...    81   3e-14
tr|Q0DUU5|Q0DUU5_ORYSJ Os03g0167100 protein OS=Oryza sativa subs...    81   3e-14
tr|B8BGS7|B8BGS7_ORYSI Putative uncharacterized protein OS=Oryza...    81   3e-14
tr|B8APC5|B8APC5_ORYSI Putative uncharacterized protein OS=Oryza...    81   3e-14
tr|B6T1V2|B6T1V2_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=...    81   3e-14
tr|B4FW18|B4FW18_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=...    81   3e-14
tr|A3AEH6|A3AEH6_ORYSJ Putative uncharacterized protein OS=Oryza...    81   3e-14
tr|A9P8N1|A9P8N1_POPTR Putative uncharacterized protein OS=Popul...    80   7e-14
tr|Q9ZNS5|Q9ZNS5_PRUPE Ribosomal protein S28 OS=Prunus persica G...    79   9e-14
tr|A7PW33|A7PW33_VITVI Chromosome chr8 scaffold_34, whole genome...    79   9e-14
tr|A5B3G5|A5B3G5_VITVI Putative uncharacterized protein (Fragmen...    79   9e-14
tr|Q6RJY5|Q6RJY5_CAPAN 28 kDa small subunit ribosomal protein OS...    79   1e-13
tr|A9NJT8|A9NJT8_PICSI Putative uncharacterized protein OS=Picea...    79   1e-13
tr|Q2HWC2|Q2HWC2_MEDTR Ribosomal protein S28e OS=Medicago trunca...    78   2e-13
tr|O49872|O49872_HORVU RpS28 OS=Hordeum vulgare PE=4 SV=1              78   2e-13
tr|A9RXD9|A9RXD9_PHYPA Predicted protein OS=Physcomitrella paten...    78   2e-13
tr|A9RQ87|A9RQ87_PHYPA Predicted protein (Fragment) OS=Physcomit...    78   2e-13
tr|A8IKP1|A8IKP1_CHLRE Ribosomal protein S28 OS=Chlamydomonas re...    78   2e-13
tr|Q8LK53|Q8LK53_HELAN Ribosomal protein small subunit 28 OS=Hel...    77   3e-13
tr|B6SP50|B6SP50_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=...    77   3e-13
tr|Q9ZRW5|Q9ZRW5_PRUPE Ribosomal protein S28 OS=Prunus persica G...    77   6e-13
tr|B6UEA6|B6UEA6_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=...    76   7e-13
tr|Q014Q6|Q014Q6_OSTTA S28 ribosomal protein (ISS) OS=Ostreococc...    76   1e-12
tr|A7QHG6|A7QHG6_VITVI Chromosome chr2 scaffold_97, whole genome...    76   1e-12
tr|A4RT38|A4RT38_OSTLU Ribosomal protein S28e OS=Ostreococcus lu...    76   1e-12
tr|A9P8H3|A9P8H3_POPTR Putative uncharacterized protein OS=Popul...    75   2e-12
tr|A5BBU2|A5BBU2_VITVI Putative uncharacterized protein (Fragmen...    70   4e-11
tr|B4PLQ8|B4PLQ8_DROYA GE23424 OS=Drosophila yakuba GN=GE23424 P...    70   7e-11
tr|A8UET6|A8UET6_AREMA Ribosomal protein rps28 (Fragment) OS=Are...    70   7e-11

>tr|Q7X9K4|Q7X9K4_WHEAT S28 ribosomal protein (Fragment) OS=Triticum
           aestivum PE=2 SV=1
          Length = 86

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 39/41 (95%), Positives = 40/41 (97%)
 Frame = +3

Query: 3   VKVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           VKVMGRTGSRGQV QVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 32  VKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 72


>tr|Q0IXR7|Q0IXR7_ORYSJ Os10g0411700 protein OS=Oryza sativa subsp.
           japonica GN=Os10g0411700 PE=4 SV=1
          Length = 65

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 39/41 (95%), Positives = 40/41 (97%)
 Frame = +3

Query: 3   VKVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           VKVMGRTGSRGQV QVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 11  VKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51


>tr|Q0DUU5|Q0DUU5_ORYSJ Os03g0167100 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0167100 PE=4 SV=1
          Length = 106

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 39/41 (95%), Positives = 40/41 (97%)
 Frame = +3

Query: 3   VKVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           VKVMGRTGSRGQV QVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 52  VKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 92


>tr|B8BGS7|B8BGS7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_33537 PE=4 SV=1
          Length = 400

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 39/41 (95%), Positives = 40/41 (97%)
 Frame = +3

Query: 3   VKVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           VKVMGRTGSRGQV QVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 346 VKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 386


>tr|B8APC5|B8APC5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10164 PE=4 SV=1
          Length = 101

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 39/41 (95%), Positives = 40/41 (97%)
 Frame = +3

Query: 3   VKVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           VKVMGRTGSRGQV QVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 47  VKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 87


>tr|B6T1V2|B6T1V2_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=4
           SV=1
          Length = 65

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 39/41 (95%), Positives = 40/41 (97%)
 Frame = +3

Query: 3   VKVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           VKVMGRTGSRGQV QVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 11  VKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51


>tr|B4FW18|B4FW18_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=4
           SV=1
          Length = 65

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 39/41 (95%), Positives = 40/41 (97%)
 Frame = +3

Query: 3   VKVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           VKVMGRTGSRGQV QVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 11  VKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51


>tr|A3AEH6|A3AEH6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_009198 PE=4 SV=1
          Length = 268

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 39/41 (95%), Positives = 40/41 (97%)
 Frame = +3

Query: 3   VKVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           VKVMGRTGSRGQV QVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 214 VKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 254


>tr|A9P8N1|A9P8N1_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 65

 Score = 79.7 bits (195), Expect = 7e-14
 Identities = 37/41 (90%), Positives = 39/41 (95%)
 Frame = +3

Query: 3   VKVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           VK+MGRTGSRGQV QVRVKF+DDQNR IMRNVKGPVREGDI
Sbjct: 11  VKIMGRTGSRGQVTQVRVKFIDDQNRFIMRNVKGPVREGDI 51


>tr|Q9ZNS5|Q9ZNS5_PRUPE Ribosomal protein S28 OS=Prunus persica
           GN=rps28.1 PE=4 SV=1
          Length = 65

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 38/41 (92%), Positives = 39/41 (95%)
 Frame = +3

Query: 3   VKVMGRTGSRGQVAQVRVKFVDDQNRLIMRNVKGPVREGDI 125
           VKVMGRTGSRGQV QVRVKF+DDQNR IMRNVKGPVREGDI
Sbjct: 11  VKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 51