DK945863 |
Clone id |
YMU02A01NGRL0010_L03 |
Library |
YMU02 |
Length |
607 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_L03. 5' end sequence. |
Accession |
DK945863 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL2356Contig1 |
Sequence |
GCACTGAATCCTTTTTGCTGTTTACTACCAATTACACTGAAAATCTTCAAAAGTCCAGTC GCAACCTCAGCACTTTGATGCTCATGACTCCTCGAAGTCTTAACCCTTTTAATATTCTGA AAGCGCGGGAGTTTATTTTCACAAAATCAGCCATCGAGTACCTCAATTCGCGCTACGGTG CAAATAGTGTAGAAGACAATGAGGAGGACGACGAGGAAGAAACTGATGAGGAAGGAAAAG ATGAGGAAGAGTCAGAAGAAGGTGCTGAACAAGAAGAGACCAGCTCGTAGAGTCGATATG GTATTGGTTTGGCATGCAAAAGCGGTTTCTTGAATCTTTAGAAAGTTTTGAAGGTCACGG TGATCCATACGTTATGCTCTTCATATGCTGTCAGTGCTCTAGAGATGAAACACTTCATTC TTTCGTTGAGCCATTTTGCGAGTCATTCTGTGCTTACAAGCAGCTGATTTCTACAGGCCT TGTCAGGATTTTGTATGCACGAGTGCTTGAAACAGAGCTTTATTATTGATATTCGCGAGA GAGTCAAGGGATATGCAACCAGAGATGGAGTGTTTGTGACGAAAAAAAAAAAAAAAAAAA AAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O49937 |
Definition |
sp|O49937|RK4_SPIOL 50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea |
Align length |
62 |
Score (bit) |
68.6 |
E-value |
2.0e-11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945863|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0010_L03, 5' (581 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O49937|RK4_SPIOL 50S ribosomal protein L4, chloroplastic OS=S... 69 2e-11 sp|O50061|RK4_ARATH 50S ribosomal protein L4, chloroplastic OS=A... 63 9e-10 sp|O80361|RK4_TOBAC 50S ribosomal protein L4, chloroplastic OS=N... 61 4e-09 sp|A0T0H9|RK4_PHATR 50S ribosomal protein L4, chloroplastic OS=P... 43 0.001 sp|O24690|RL4_SYNP6 50S ribosomal protein L4 OS=Synechococcus sp... 41 0.004 sp|Q31L08|RL4_SYNE7 50S ribosomal protein L4 OS=Synechococcus el... 41 0.004 sp|Q21RV9|RL4_RHOFD 50S ribosomal protein L4 OS=Rhodoferax ferri... 41 0.005 sp|Q8XV13|RL4_RALSO 50S ribosomal protein L4 OS=Ralstonia solana... 40 0.011 sp|Q1LI38|RL4_RALME 50S ribosomal protein L4 OS=Ralstonia metall... 40 0.011 sp|A7GJ73|RL4_CLOBL 50S ribosomal protein L4 OS=Clostridium botu... 39 0.014 sp|A5I7K5|RL4_CLOBH 50S ribosomal protein L4 OS=Clostridium botu... 39 0.014 sp|A7FZ68|RL4_CLOB1 50S ribosomal protein L4 OS=Clostridium botu... 39 0.014 sp|Q4FLL9|RL4_PELUB 50S ribosomal protein L4 OS=Pelagibacter ubi... 39 0.019 sp|A1ALU2|RL4_PELPD 50S ribosomal protein L4 OS=Pelobacter propi... 39 0.019 sp|A1KRH4|RL4_NEIMF 50S ribosomal protein L4 OS=Neisseria mening... 39 0.019 sp|P61057|RL4_NEIMB 50S ribosomal protein L4 OS=Neisseria mening... 39 0.019 sp|P61056|RL4_NEIMA 50S ribosomal protein L4 OS=Neisseria mening... 39 0.019 sp|A9M3W5|RL4_NEIM0 50S ribosomal protein L4 OS=Neisseria mening... 39 0.019 sp|Q5F5S8|RL4_NEIG1 50S ribosomal protein L4 OS=Neisseria gonorr... 39 0.019 sp|A2SLF6|RL4_METPP 50S ribosomal protein L4 OS=Methylibium petr... 39 0.019 sp|Q7NQF3|RL4_CHRVO 50S ribosomal protein L4 OS=Chromobacterium ... 39 0.019 sp|Q7VTD2|RL4_BORPE 50S ribosomal protein L4 OS=Bordetella pertu... 39 0.019 sp|Q7W2F5|RL4_BORPA 50S ribosomal protein L4 OS=Bordetella parap... 39 0.019 sp|Q7WRC4|RL4_BORBR 50S ribosomal protein L4 OS=Bordetella bronc... 39 0.019 sp|B0JI02|RL4_MICAN 50S ribosomal protein L4 OS=Microcystis aeru... 39 0.024 sp|Q5WLR1|RL4_BACSK 50S ribosomal protein L4 OS=Bacillus clausii... 38 0.032 sp|Q3MFC0|RL4_ANAVT 50S ribosomal protein L4 OS=Anabaena variabi... 38 0.032 sp|Q8YPI0|RL4_ANASP 50S ribosomal protein L4 OS=Anabaena sp. (st... 38 0.032 sp|Q46WE5|RL4_RALEJ 50S ribosomal protein L4 OS=Ralstonia eutrop... 37 0.054 sp|Q0K620|RL4_RALEH 50S ribosomal protein L4 OS=Ralstonia eutrop... 37 0.054
>sp|O49937|RK4_SPIOL 50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea GN=RPL4 PE=1 SV=1 Length = 293
Score = 68.6 bits (166), Expect = 2e-11 Identities = 30/62 (48%), Positives = 44/62 (70%) Frame = +3
Query: 6 ESFLLFTTNYTENLQKSSRNLSTLMLMTPRSLNPFNILKAREFIFTKSAIEYLNSRYGAN 185 E L F + EN++KS RN+ TL L+TPRSLN F++L A + +FT+ I+YLN RYG + Sbjct: 203 EKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVLNAEKLVFTEGTIQYLNQRYGVD 262
Query: 186 SV 191 ++ Sbjct: 263 TL 264
>sp|O50061|RK4_ARATH 50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=2 SV=2 Length = 282
Score = 63.2 bits (152), Expect = 9e-10 Identities = 28/62 (45%), Positives = 44/62 (70%) Frame = +3
Query: 6 ESFLLFTTNYTENLQKSSRNLSTLMLMTPRSLNPFNILKAREFIFTKSAIEYLNSRYGAN 185 E + + EN+ KSSRN+ TL ++TPR+LN F+IL A + + T +A+E+LN+RYG + Sbjct: 205 EKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFLNARYGVD 264
Query: 186 SV 191 +V Sbjct: 265 AV 266
>sp|O80361|RK4_TOBAC 50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1 Length = 282
Score = 61.2 bits (147), Expect = 4e-09 Identities = 27/58 (46%), Positives = 42/58 (72%) Frame = +3
Query: 6 ESFLLFTTNYTENLQKSSRNLSTLMLMTPRSLNPFNILKAREFIFTKSAIEYLNSRYG 179 E L T+ ++N+ SSRN+ TL ++TPR+LN F+IL + + + TKSA+++LN RYG Sbjct: 196 EKSLFLMTDVSDNVILSSRNIGTLKMLTPRTLNLFDILDSEKLVLTKSAVDFLNERYG 253
>sp|A0T0H9|RK4_PHATR 50S ribosomal protein L4, chloroplastic OS=Phaeodactylum tricornutum GN=rpl4 PE=3 SV=1 Length = 215
Score = 42.7 bits (99), Expect = 0.001 Identities = 21/57 (36%), Positives = 34/57 (59%) Frame = +3
Query: 6 ESFLLFTTNYTENLQKSSRNLSTLMLMTPRSLNPFNILKAREFIFTKSAIEYLNSRY 176 + LL T+ T L+ +++NL + L+ SLN +ILKAR+ I T +AI ++ Y Sbjct: 157 QKVLLVVTDKTSVLKLATQNLKNVELLAASSLNTLSILKARQIILTSAAINHIKESY 213
>sp|O24690|RL4_SYNP6 50S ribosomal protein L4 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplD PE=3 SV=1 Length = 210
Score = 41.2 bits (95), Expect = 0.004 Identities = 20/55 (36%), Positives = 33/55 (60%) Frame = +3
Query: 15 LLFTTNYTENLQKSSRNLSTLMLMTPRSLNPFNILKAREFIFTKSAIEYLNSRYG 179 LL T + +N++ S RNL + L+T +LN F++L A + T +A+E + YG Sbjct: 155 LLITADRDQNVELSVRNLPNVKLITATNLNIFDLLNADRIVSTSAALEKIQEVYG 209
>sp|Q31L08|RL4_SYNE7 50S ribosomal protein L4 OS=Synechococcus elongatus (strain PCC 7942) GN=rplD PE=3 SV=1 Length = 210
Score = 41.2 bits (95), Expect = 0.004 Identities = 20/55 (36%), Positives = 33/55 (60%) Frame = +3
Query: 15 LLFTTNYTENLQKSSRNLSTLMLMTPRSLNPFNILKAREFIFTKSAIEYLNSRYG 179 LL T + +N++ S RNL + L+T +LN F++L A + T +A+E + YG Sbjct: 155 LLITADRDQNVELSVRNLPNVKLITATNLNIFDLLNADRIVSTSAALEKIQEVYG 209
>sp|Q21RV9|RL4_RHOFD 50S ribosomal protein L4 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rplD PE=3 SV=1 Length = 206
Score = 40.8 bits (94), Expect = 0.005 Identities = 20/57 (35%), Positives = 34/57 (59%) Frame = +3
Query: 6 ESFLLFTTNYTENLQKSSRNLSTLMLMTPRSLNPFNILKAREFIFTKSAIEYLNSRY 176 ES L+ ENL +SRNL ++++ PR +P +++ R+ I TK+A+E L + Sbjct: 149 ESVLVIADEVDENLYLASRNLVNVLVVEPRYADPVSLVHYRKVIVTKAAMEKLQEMF 205
>sp|Q8XV13|RL4_RALSO 50S ribosomal protein L4 OS=Ralstonia solanacearum GN=rplD PE=3 SV=1 Length = 206
Score = 39.7 bits (91), Expect = 0.011 Identities = 17/50 (34%), Positives = 34/50 (68%) Frame = +3
Query: 6 ESFLLFTTNYTENLQKSSRNLSTLMLMTPRSLNPFNILKAREFIFTKSAI 155 +S L+ T N ENL +SRNL+ ++++ PR +P +++ ++ + TK+A+ Sbjct: 149 DSVLVITDNLDENLFLASRNLAHVLVVEPRHADPLSLVHYKKVLVTKAAV 198
>sp|Q1LI38|RL4_RALME 50S ribosomal protein L4 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rplD PE=3 SV=1 Length = 206
Score = 39.7 bits (91), Expect = 0.011 Identities = 17/50 (34%), Positives = 32/50 (64%) Frame = +3
Query: 6 ESFLLFTTNYTENLQKSSRNLSTLMLMTPRSLNPFNILKAREFIFTKSAI 155 +S L+ T N ENL +SRNL + ++ PR +P +++ ++ + TK+A+ Sbjct: 149 DSVLIITDNLDENLYLASRNLPNVAVVEPRHADPLSLVHYKKVLVTKAAV 198
>sp|A7GJ73|RL4_CLOBL 50S ribosomal protein L4 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplD PE=3 SV=1 Length = 206
Score = 39.3 bits (90), Expect = 0.014 Identities = 16/54 (29%), Positives = 32/54 (59%) Frame = +3
Query: 15 LLFTTNYTENLQKSSRNLSTLMLMTPRSLNPFNILKAREFIFTKSAIEYLNSRY 176 L+ T N EN+ KS+RN+ + ++ ++N +++LK + + TK A+ + Y Sbjct: 152 LIITNNAEENVYKSARNIEGVQIIPVNNINVYDVLKYDKVVITKDAVSKIEEVY 205
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q84QA8 |
Definition |
tr|Q84QA8|Q84QA8_ORYSJ Putative uncharacterized protein OJ1012B02.13 OS=Oryza sativa subsp. japonica |
Align length |
59 |
Score (bit) |
66.6 |
E-value |
9.0e-10 |
Report |
|