DK947732
Clone id YMU02A01NGRL0016_N08
Library
Length 429
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_N08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GATTCGCCTGTTAAGCTTGCCATTGTGGTGAAAGTCATGGGGCGGACTGGCTCCCGAGGT
CAAGTGACTCAAGTGAGGGTCAAGTTTGTCGATGACCAAAATCGTCTCATCATGAGAAAT
GTGAAAGGTCCTGTCCGAGAAGGAGATATCCTAGCTCTTTTGGAGTCTGAGAGAGAGGCT
CGAAGACTTCGATAGCTGTGGTGGTTTTTTGATGGTTCGAATGGGCTATTGTCATGGATC
ATAAGTTGGAAAAGCATTTTGGAGAGTACGGCCGGTTATAGGATGATAGGCTTGCTGTTT
TGGCAACAACTTAATCATGTTTTTGACAATGCGGCATGTGCTTCTATGTAACATGAGTTT
TTCAGATTGATGAGAATCAAGTATTGTTTTTAGTATTTCCGAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P46302
Definition sp|P46302|RS28_MAIZE 40S ribosomal protein S28 OS=Zea mays
Align length 50
Score (bit) 91.3
E-value 1.0e-18
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947732|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_N08, 5'
(401 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P46302|RS28_MAIZE 40S ribosomal protein S28 OS=Zea mays GN=RP... 91 1e-18
sp|P34789|RS282_ARATH 40S ribosomal protein S28-2 OS=Arabidopsis... 79 5e-15
sp|Q9SR73|RS281_ARATH 40S ribosomal protein S28-1 OS=Arabidopsis... 79 5e-15
sp|Q90YP3|RS28_ICTPU 40S ribosomal protein S28 OS=Ictalurus punc... 78 1e-14
sp|Q6PBK3|RS28_DANRE 40S ribosomal protein S28 OS=Danio rerio GN... 78 1e-14
sp|Q10421|RS28_SCHPO 40S ribosomal protein S28 OS=Schizosaccharo... 76 6e-14
sp|P62859|RS28_RAT 40S ribosomal protein S28 OS=Rattus norvegicu... 76 6e-14
sp|Q6QAT1|RS28_PIG 40S ribosomal protein S28 OS=Sus scrofa GN=RP... 76 6e-14
sp|P62858|RS28_MOUSE 40S ribosomal protein S28 OS=Mus musculus G... 76 6e-14
sp|P62857|RS28_HUMAN 40S ribosomal protein S28 OS=Homo sapiens G... 76 6e-14
sp|Q56JX6|RS28_BOVIN 40S ribosomal protein S28 OS=Bos taurus GN=... 76 6e-14
sp|P33286|RS28_KLUMA 40S ribosomal protein S28 OS=Kluyveromyces ... 75 1e-13
sp|P33285|RS28_KLULA 40S ribosomal protein S28 OS=Kluyveromyces ... 75 1e-13
sp|Q74ZD8|RS28_ASHGO 40S ribosomal protein S28 OS=Ashbya gossypi... 75 1e-13
sp|Q7S6W5|RS28_NEUCR 40S ribosomal protein S28 OS=Neurospora cra... 74 2e-13
sp|Q9W334|RS28_DROME 40S ribosomal protein S28 OS=Drosophila mel... 73 4e-13
sp|Q6FLC3|RS28_CANGA 40S ribosomal protein S28 OS=Candida glabra... 73 4e-13
sp|P0C0X0|RS28B_YEAST 40S ribosomal protein S28-B OS=Saccharomyc... 73 4e-13
sp|Q3E7X9|RS28A_YEAST 40S ribosomal protein S28-A OS=Saccharomyc... 73 4e-13
sp|O61590|RS28_OSTOS 40S ribosomal protein S28 OS=Ostertagia ost... 71 2e-12
sp|Q962Q2|RS28_SPOFR 40S ribosomal protein S28 OS=Spodoptera fru... 69 6e-12
sp|Q6EV21|RS28_PAPDA 40S ribosomal protein S28 OS=Papilio dardan... 69 6e-12
sp|Q6PS50|RS28_BOMMO 40S ribosomal protein S28 OS=Bombyx mori GN... 69 6e-12
sp|Q95Y04|RS28_CAEEL 40S ribosomal protein S28 OS=Caenorhabditis... 69 9e-12
sp|Q8TVE7|RS28_METKA 30S ribosomal protein S28e OS=Methanopyrus ... 58 1e-08
sp|Q8ZTA7|RS28_PYRAE 30S ribosomal protein S28e OS=Pyrobaculum a... 55 1e-07
sp|Q54MZ5|RS28_DICDI 40S ribosomal protein S28 OS=Dictyostelium ... 54 2e-07
sp|A1RXH2|RS28_THEPD 30S ribosomal protein S28e OS=Thermofilum p... 54 3e-07
sp|P61031|RS28_NANEQ 30S ribosomal protein S28e OS=Nanoarchaeum ... 54 3e-07
sp|P61030|RS28_PYRHO 30S ribosomal protein S28e OS=Pyrococcus ho... 53 4e-07

>sp|P46302|RS28_MAIZE 40S ribosomal protein S28 OS=Zea mays GN=RPS28
PE=3 SV=1
Length = 65

Score = 91.3 bits (225), Expect = 1e-18
Identities = 45/50 (90%), Positives = 48/50 (96%)
Frame = +1

Query: 1 DSPVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
D+ VKLA+VVKVMGRTGSRGQVTQVRVKF+DDQNRLIMRNVKGPV EGDI
Sbjct: 2 DTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDI 51


>sp|P34789|RS282_ARATH 40S ribosomal protein S28-2 OS=Arabidopsis
thaliana GN=RPS28C PE=2 SV=1
Length = 64

Score = 79.3 bits (194), Expect = 5e-15
Identities = 40/50 (80%), Positives = 44/50 (88%)
Frame = +1

Query: 1 DSPVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
DS +K A+VVKVMGRTGSRGQVTQVRVKF D +R IMRNVKGPVREGD+
Sbjct: 2 DSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRFIMRNVKGPVREGDV 50


>sp|Q9SR73|RS281_ARATH 40S ribosomal protein S28-1 OS=Arabidopsis
thaliana GN=RPS28A PE=2 SV=1
Length = 64

Score = 79.3 bits (194), Expect = 5e-15
Identities = 41/50 (82%), Positives = 44/50 (88%)
Frame = +1

Query: 1 DSPVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
DS +K A+VVKVMGRTGSRGQVTQVRVKF D +R IMRNVKGPVREGDI
Sbjct: 2 DSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDI 50


>sp|Q90YP3|RS28_ICTPU 40S ribosomal protein S28 OS=Ictalurus
punctatus GN=rps28 PE=3 SV=1
Length = 69

Score = 78.2 bits (191), Expect = 1e-14
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = +1

Query: 7 PVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
P+KLA V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+
Sbjct: 8 PIKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55


>sp|Q6PBK3|RS28_DANRE 40S ribosomal protein S28 OS=Danio rerio
GN=rps28 PE=3 SV=1
Length = 69

Score = 78.2 bits (191), Expect = 1e-14
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = +1

Query: 7 PVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
P+KLA V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+
Sbjct: 8 PIKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55


>sp|Q10421|RS28_SCHPO 40S ribosomal protein S28
OS=Schizosaccharomyces pombe GN=rps28a PE=2 SV=1
Length = 68

Score = 75.9 bits (185), Expect = 6e-14
Identities = 37/48 (77%), Positives = 43/48 (89%)
Frame = +1

Query: 7 PVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
PVKLA V+KV+GRTGSRG VTQVRV+F+DD +R I+RNVKGPVRE DI
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDI 54


>sp|P62859|RS28_RAT 40S ribosomal protein S28 OS=Rattus norvegicus
GN=Rps28 PE=1 SV=1
Length = 69

Score = 75.9 bits (185), Expect = 6e-14
Identities = 35/48 (72%), Positives = 43/48 (89%)
Frame = +1

Query: 7 PVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
P+KLA V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+
Sbjct: 8 PIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55


>sp|Q6QAT1|RS28_PIG 40S ribosomal protein S28 OS=Sus scrofa GN=RPS28
PE=3 SV=2
Length = 69

Score = 75.9 bits (185), Expect = 6e-14
Identities = 35/48 (72%), Positives = 43/48 (89%)
Frame = +1

Query: 7 PVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
P+KLA V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+
Sbjct: 8 PIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55


>sp|P62858|RS28_MOUSE 40S ribosomal protein S28 OS=Mus musculus
GN=Rps28 PE=2 SV=1
Length = 69

Score = 75.9 bits (185), Expect = 6e-14
Identities = 35/48 (72%), Positives = 43/48 (89%)
Frame = +1

Query: 7 PVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
P+KLA V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+
Sbjct: 8 PIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55


>sp|P62857|RS28_HUMAN 40S ribosomal protein S28 OS=Homo sapiens
GN=RPS28 PE=1 SV=1
Length = 69

Score = 75.9 bits (185), Expect = 6e-14
Identities = 35/48 (72%), Positives = 43/48 (89%)
Frame = +1

Query: 7 PVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
P+KLA V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+
Sbjct: 8 PIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55


tr_hit_id Q7X9K4
Definition tr|Q7X9K4|Q7X9K4_WHEAT S28 ribosomal protein (Fragment) OS=Triticum aestivum
Align length 50
Score (bit) 94.4
E-value 3.0e-18
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947732|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_N08, 5'
(401 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q7X9K4|Q7X9K4_WHEAT S28 ribosomal protein (Fragment) OS=Triti... 94 3e-18
tr|Q0IXR7|Q0IXR7_ORYSJ Os10g0411700 protein OS=Oryza sativa subs... 94 3e-18
tr|Q0DUU5|Q0DUU5_ORYSJ Os03g0167100 protein OS=Oryza sativa subs... 94 3e-18
tr|B8BGS7|B8BGS7_ORYSI Putative uncharacterized protein OS=Oryza... 94 3e-18
tr|B8APC5|B8APC5_ORYSI Putative uncharacterized protein OS=Oryza... 94 3e-18
tr|B6T1V2|B6T1V2_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=... 94 3e-18
tr|B4FW18|B4FW18_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=... 94 3e-18
tr|A3AEH6|A3AEH6_ORYSJ Putative uncharacterized protein OS=Oryza... 94 3e-18
tr|A8IKP1|A8IKP1_CHLRE Ribosomal protein S28 OS=Chlamydomonas re... 94 4e-18
tr|A9RQ87|A9RQ87_PHYPA Predicted protein (Fragment) OS=Physcomit... 93 6e-18
tr|A9RXD9|A9RXD9_PHYPA Predicted protein OS=Physcomitrella paten... 92 1e-17
tr|A9NJT8|A9NJT8_PICSI Putative uncharacterized protein OS=Picea... 92 1e-17
tr|O49872|O49872_HORVU RpS28 OS=Hordeum vulgare PE=4 SV=1 92 2e-17
tr|Q9ZNS5|Q9ZNS5_PRUPE Ribosomal protein S28 OS=Prunus persica G... 91 2e-17
tr|A9P8N1|A9P8N1_POPTR Putative uncharacterized protein OS=Popul... 91 2e-17
tr|B6SP50|B6SP50_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=... 91 3e-17
tr|B6UEA6|B6UEA6_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=... 90 6e-17
tr|A7PW33|A7PW33_VITVI Chromosome chr8 scaffold_34, whole genome... 90 6e-17
tr|Q9ZRW5|Q9ZRW5_PRUPE Ribosomal protein S28 OS=Prunus persica G... 89 1e-16
tr|Q2HWC2|Q2HWC2_MEDTR Ribosomal protein S28e OS=Medicago trunca... 88 2e-16
tr|A5B3G5|A5B3G5_VITVI Putative uncharacterized protein (Fragmen... 88 2e-16
tr|Q8LK53|Q8LK53_HELAN Ribosomal protein small subunit 28 OS=Hel... 87 3e-16
tr|A9P8H3|A9P8H3_POPTR Putative uncharacterized protein OS=Popul... 87 5e-16
tr|Q6RJY5|Q6RJY5_CAPAN 28 kDa small subunit ribosomal protein OS... 86 9e-16
tr|A7QHG6|A7QHG6_VITVI Chromosome chr2 scaffold_97, whole genome... 85 2e-15
tr|A4RT38|A4RT38_OSTLU Ribosomal protein S28e OS=Ostreococcus lu... 85 2e-15
tr|Q014Q6|Q014Q6_OSTTA S28 ribosomal protein (ISS) OS=Ostreococc... 82 1e-14
tr|A8UET6|A8UET6_AREMA Ribosomal protein rps28 (Fragment) OS=Are... 81 2e-14
tr|B0LQA8|B0LQA8_ARALY At5g03850-like protein (Fragment) OS=Arab... 79 9e-14
tr|B0LQ86|B0LQ86_ARATH At5g03850 (Fragment) OS=Arabidopsis thali... 79 9e-14

>tr|Q7X9K4|Q7X9K4_WHEAT S28 ribosomal protein (Fragment) OS=Triticum
aestivum PE=2 SV=1
Length = 86

Score = 94.4 bits (233), Expect = 3e-18
Identities = 46/50 (92%), Positives = 49/50 (98%)
Frame = +1

Query: 1 DSPVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
D+ VKLA+VVKVMGRTGSRGQVTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 23 DTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 72


>tr|Q0IXR7|Q0IXR7_ORYSJ Os10g0411700 protein OS=Oryza sativa subsp.
japonica GN=Os10g0411700 PE=4 SV=1
Length = 65

Score = 94.4 bits (233), Expect = 3e-18
Identities = 46/50 (92%), Positives = 49/50 (98%)
Frame = +1

Query: 1 DSPVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
D+ VKLA+VVKVMGRTGSRGQVTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 2 DTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51


>tr|Q0DUU5|Q0DUU5_ORYSJ Os03g0167100 protein OS=Oryza sativa subsp.
japonica GN=Os03g0167100 PE=4 SV=1
Length = 106

Score = 94.4 bits (233), Expect = 3e-18
Identities = 46/50 (92%), Positives = 49/50 (98%)
Frame = +1

Query: 1 DSPVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
D+ VKLA+VVKVMGRTGSRGQVTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 43 DTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 92


>tr|B8BGS7|B8BGS7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_33537 PE=4 SV=1
Length = 400

Score = 94.4 bits (233), Expect = 3e-18
Identities = 46/50 (92%), Positives = 49/50 (98%)
Frame = +1

Query: 1 DSPVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
D+ VKLA+VVKVMGRTGSRGQVTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 337 DTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 386


>tr|B8APC5|B8APC5_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_10164 PE=4 SV=1
Length = 101

Score = 94.4 bits (233), Expect = 3e-18
Identities = 46/50 (92%), Positives = 49/50 (98%)
Frame = +1

Query: 1 DSPVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
D+ VKLA+VVKVMGRTGSRGQVTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 38 DTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 87


>tr|B6T1V2|B6T1V2_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=4
SV=1
Length = 65

Score = 94.4 bits (233), Expect = 3e-18
Identities = 46/50 (92%), Positives = 49/50 (98%)
Frame = +1

Query: 1 DSPVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
D+ VKLA+VVKVMGRTGSRGQVTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 2 DTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51


>tr|B4FW18|B4FW18_MAIZE 40S ribosomal protein S28 OS=Zea mays PE=4
SV=1
Length = 65

Score = 94.4 bits (233), Expect = 3e-18
Identities = 46/50 (92%), Positives = 49/50 (98%)
Frame = +1

Query: 1 DSPVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
D+ VKLA+VVKVMGRTGSRGQVTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 2 DTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51


>tr|A3AEH6|A3AEH6_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_009198 PE=4 SV=1
Length = 268

Score = 94.4 bits (233), Expect = 3e-18
Identities = 46/50 (92%), Positives = 49/50 (98%)
Frame = +1

Query: 1 DSPVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
D+ VKLA+VVKVMGRTGSRGQVTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 205 DTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 254


>tr|A8IKP1|A8IKP1_CHLRE Ribosomal protein S28 OS=Chlamydomonas
reinhardtii GN=RPS28 PE=4 SV=1
Length = 65

Score = 93.6 bits (231), Expect = 4e-18
Identities = 45/50 (90%), Positives = 49/50 (98%)
Frame = +1

Query: 1 DSPVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
D+P KLAIV+KV+GRTGSRGQVTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 2 DAPAKLAIVMKVIGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51


>tr|A9RQ87|A9RQ87_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_117626 PE=4 SV=1
Length = 65

Score = 93.2 bits (230), Expect = 6e-18
Identities = 46/50 (92%), Positives = 49/50 (98%)
Frame = +1

Query: 1 DSPVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREGDI 150
DS VKLAIV+KV+GRTGSRGQVTQVRVKF+DDQNRLIMRNVKGPVREGDI
Sbjct: 2 DSAVKLAIVMKVIGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51